Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACI2O8_RS11580 Genome accession   NZ_CP173415
Coordinates   2254201..2254821 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain FJYA24     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2249201..2259821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS11540 (ACI2O8_11540) ptsA 2250332..2250838 (-) 507 WP_160221656.1 PTS glucose transporter subunit IIA -
  ACI2O8_RS11545 (ACI2O8_11545) ypqA 2250976..2251395 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  ACI2O8_RS11550 (ACI2O8_11550) sppG 2251416..2251793 (-) 378 WP_014477159.1 YppG family protein -
  ACI2O8_RS11555 (ACI2O8_11555) yppF 2251981..2252169 (+) 189 WP_003230690.1 YppF family protein -
  ACI2O8_RS11560 (ACI2O8_11560) yppE 2252208..2252579 (-) 372 WP_128422294.1 YppE family protein -
  ACI2O8_RS11565 (ACI2O8_11565) yppD 2252625..2252870 (-) 246 WP_015251831.1 YppD family protein -
  ACI2O8_RS11570 (ACI2O8_11570) sspM 2253069..2253173 (+) 105 WP_128422295.1 acid-soluble spore protein SspM -
  ACI2O8_RS11575 (ACI2O8_11575) yppC 2253198..2254160 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  ACI2O8_RS11580 (ACI2O8_11580) recU 2254201..2254821 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACI2O8_RS11585 (ACI2O8_11585) ponA 2254843..2257587 (+) 2745 WP_160221657.1 PBP1A family penicillin-binding protein -
  ACI2O8_RS11590 (ACI2O8_11590) ypoC 2257663..2258157 (-) 495 WP_009967579.1 YpoC family protein -
  ACI2O8_RS11595 (ACI2O8_11595) nth 2258154..2258813 (-) 660 WP_009967580.1 endonuclease III -
  ACI2O8_RS11600 (ACI2O8_11600) dnaD 2258832..2259530 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1072099 ACI2O8_RS11580 WP_004399067.1 2254201..2254821(+) (recU) [Bacillus subtilis strain FJYA24]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1072099 ACI2O8_RS11580 WP_004399067.1 2254201..2254821(+) (recU) [Bacillus subtilis strain FJYA24]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment