Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACI3L8_RS12360 Genome accession   NZ_CP173391
Coordinates   2699983..2701386 (+) Length   467 a.a.
NCBI ID   WP_038889850.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2694983..2706386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS12340 (ACI3L8_12340) - 2695007..2696338 (+) 1332 WP_045400701.1 hypothetical protein -
  ACI3L8_RS12345 (ACI3L8_12345) - 2696358..2696798 (+) 441 WP_038889848.1 hypothetical protein -
  ACI3L8_RS12355 (ACI3L8_12355) uvrB 2697610..2699640 (+) 2031 WP_051118459.1 excinuclease ABC subunit UvrB -
  ACI3L8_RS12360 (ACI3L8_12360) luxO 2699983..2701386 (+) 1404 WP_038889850.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACI3L8_RS12365 (ACI3L8_12365) luxU 2701383..2701727 (+) 345 WP_404971479.1 quorum-sensing phosphorelay protein LuxU -
  ACI3L8_RS12370 (ACI3L8_12370) - 2701844..2702737 (-) 894 WP_005531401.1 YvcK family protein -
  ACI3L8_RS12375 (ACI3L8_12375) moaA 2703035..2704024 (+) 990 WP_399425036.1 GTP 3',8-cyclase MoaA -
  ACI3L8_RS12380 (ACI3L8_12380) moaB 2704125..2704637 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  ACI3L8_RS12385 (ACI3L8_12385) moaC 2704664..2705140 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACI3L8_RS12390 (ACI3L8_12390) moaD 2705140..2705397 (+) 258 WP_005433220.1 molybdopterin synthase sulfur carrier subunit -
  ACI3L8_RS12395 (ACI3L8_12395) moaE 2705399..2705854 (+) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52154.68 Da        Isoelectric Point: 5.8849

>NTDB_id=1072034 ACI3L8_RS12360 WP_038889850.1 2699983..2701386(+) (luxO) [Vibrio campbellii strain LB3]
MQQMTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1072034 ACI3L8_RS12360 WP_038889850.1 2699983..2701386(+) (luxO) [Vibrio campbellii strain LB3]
ATGCAACAAATGACAGAAGGTCAAAAGTCTCGTTATCTACTTATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATCCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACTGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAACAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGCACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTATGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAGTTGCAAAACGTATTGCGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTCAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment