Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACI3L8_RS10095 Genome accession   NZ_CP173391
Coordinates   2189144..2189662 (+) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2184144..2194662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS10085 (ACI3L8_10085) gshA 2186861..2188429 (+) 1569 WP_404971378.1 glutamate--cysteine ligase -
  ACI3L8_RS10090 (ACI3L8_10090) - 2188449..2189054 (+) 606 WP_005438049.1 hypothetical protein -
  ACI3L8_RS10095 (ACI3L8_10095) luxS 2189144..2189662 (+) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  ACI3L8_RS10100 (ACI3L8_10100) - 2189751..2191025 (-) 1275 WP_005426658.1 HlyC/CorC family transporter -
  ACI3L8_RS10105 (ACI3L8_10105) - 2191181..2191975 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  ACI3L8_RS10110 (ACI3L8_10110) ffh 2192189..2193571 (+) 1383 WP_005462555.1 signal recognition particle protein -
  ACI3L8_RS10115 (ACI3L8_10115) rpsP 2193782..2194030 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  ACI3L8_RS10120 (ACI3L8_10120) rimM 2194058..2194606 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=1072028 ACI3L8_RS10095 WP_005426655.1 2189144..2189662(+) (luxS) [Vibrio campbellii strain LB3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1072028 ACI3L8_RS10095 WP_005426655.1 2189144..2189662(+) (luxS) [Vibrio campbellii strain LB3]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGCTTCTACATGAGCTTGATTGGTACGCCTTCGGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTAGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment