Detailed information NTG1072025

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3L8_RS09965
• Genome accession: NZ_CP173391
• Coordinates: 2166396..2167382 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LB3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2161396..2172382

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L8_RS09930 (ACI3L8_09930)	ftsB	2161402..2161683 (+)	282	WP_005452106.1	cell division protein FtsB	-
ACI3L8_RS09935 (ACI3L8_09935)	ispD	2161685..2162395 (+)	711	WP_404971373.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI3L8_RS09940 (ACI3L8_09940)	ispF	2162410..2162886 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3L8_RS09945 (ACI3L8_09945)	truD	2162932..2163975 (+)	1044	WP_077262185.1	tRNA pseudouridine(13) synthase TruD	-
ACI3L8_RS09950 (ACI3L8_09950)	surE	2163975..2164751 (+)	777	WP_080765350.1	5'/3'-nucleotidase SurE	-
ACI3L8_RS09955 (ACI3L8_09955)	-	2164751..2165377 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACI3L8_RS09960 (ACI3L8_09960)	-	2165392..2166315 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACI3L8_RS09965 (ACI3L8_09965)	rpoS	2166396..2167382 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
ACI3L8_RS09970 (ACI3L8_09970)	mutS	2167471..2170032 (-)	2562	WP_404971374.1	DNA mismatch repair protein MutS	-
ACI3L8_RS09975 (ACI3L8_09975)	pncC	2170118..2170600 (+)	483	WP_045395379.1	nicotinamide-nucleotide amidase	-
ACI3L8_RS09980 (ACI3L8_09980)	recA	2170801..2171844 (+)	1044	WP_005425359.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1072025 ACI3L8_RS09965 WP_005425361.1 2166396..2167382(+) (rpoS) [Vibrio campbellii strain LB3]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1072025 ACI3L8_RS09965 WP_005425361.1 2166396..2167382(+) (rpoS) [Vibrio campbellii strain LB3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGTAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGCCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGCGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857