Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACI3L8_RS00305 Genome accession   NZ_CP173391
Coordinates   73028..74449 (+) Length   473 a.a.
NCBI ID   WP_404971732.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68028..79449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS00285 (ACI3L8_00285) - 68420..69032 (-) 613 Protein_54 flavin reductase family protein -
  ACI3L8_RS00290 (ACI3L8_00290) - 69698..70393 (+) 696 WP_331444399.1 NAD(P)H-binding protein -
  ACI3L8_RS00295 (ACI3L8_00295) - 70587..71960 (+) 1374 WP_404971731.1 L-cystine transporter -
  ACI3L8_RS00300 (ACI3L8_00300) - 72186..72866 (+) 681 WP_050919688.1 DUF1826 domain-containing protein -
  ACI3L8_RS00305 (ACI3L8_00305) sbcB 73028..74449 (+) 1422 WP_404971732.1 exodeoxyribonuclease I Machinery gene
  ACI3L8_RS00310 (ACI3L8_00310) - 74508..74882 (+) 375 WP_012127845.1 CidA/LrgA family protein -
  ACI3L8_RS00315 (ACI3L8_00315) - 74884..75561 (+) 678 WP_005428010.1 LrgB family protein -
  ACI3L8_RS00320 (ACI3L8_00320) cdd 75826..76713 (+) 888 WP_005427951.1 cytidine deaminase -
  ACI3L8_RS00325 (ACI3L8_00325) - 76777..77475 (-) 699 WP_038890351.1 hypothetical protein -
  ACI3L8_RS00330 (ACI3L8_00330) purT 77684..78859 (+) 1176 WP_038890349.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54527.81 Da        Isoelectric Point: 4.9269

>NTDB_id=1071996 ACI3L8_RS00305 WP_404971732.1 73028..74449(+) (sbcB) [Vibrio campbellii strain LB3]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1071996 ACI3L8_RS00305 WP_404971732.1 73028..74449(+) (sbcB) [Vibrio campbellii strain LB3]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGTCCAGAAGGCGTAGAGTGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAGCTTTCAACAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGTTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATTATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACTCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment