Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACI3L5_RS18650 Genome accession   NZ_CP173390
Coordinates   566635..567816 (+) Length   393 a.a.
NCBI ID   WP_079401271.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 561635..572816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS18640 (ACI3L5_18640) - 563974..564960 (+) 987 WP_045399245.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACI3L5_RS18645 (ACI3L5_18645) ylqF 565281..566225 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  ACI3L5_RS18650 (ACI3L5_18650) cqsA 566635..567816 (+) 1182 WP_079401271.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACI3L5_RS18655 (ACI3L5_18655) cqsS 567923..569968 (-) 2046 WP_404974309.1 response regulator Regulator
  ACI3L5_RS18660 (ACI3L5_18660) - 570272..570889 (+) 618 WP_050910831.1 HAD family phosphatase -
  ACI3L5_RS18665 (ACI3L5_18665) - 570964..571512 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44057.07 Da        Isoelectric Point: 5.9816

>NTDB_id=1071990 ACI3L5_RS18650 WP_079401271.1 566635..567816(+) (cqsA) [Vibrio campbellii strain LB10]
MSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1071990 ACI3L5_RS18650 WP_079401271.1 566635..567816(+) (cqsA) [Vibrio campbellii strain LB10]
ATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCGTGATGCTATCTACGAGCACGATGATAACGTCGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATT
TCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTATCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGC
ATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGGCCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAA
ATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAACGAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

99.237

0.567

Multiple sequence alignment