Detailed information NTG1071977

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3L5_RS14430
• Genome accession: NZ_CP173389
• Coordinates: 3182000..3182986 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LB10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3177000..3187986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L5_RS14415 (ACI3L5_14415)	recA	3177538..3178581 (-)	1044	WP_005425359.1	recombinase RecA	Machinery gene
ACI3L5_RS14420 (ACI3L5_14420)	pncC	3178782..3179264 (-)	483	WP_233969085.1	nicotinamide-nucleotide amidase	-
ACI3L5_RS14425 (ACI3L5_14425)	mutS	3179350..3181911 (+)	2562	WP_038891104.1	DNA mismatch repair protein MutS	-
ACI3L5_RS14430 (ACI3L5_14430)	rpoS	3182000..3182986 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
ACI3L5_RS14435 (ACI3L5_14435)	-	3183067..3183990 (-)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACI3L5_RS14440 (ACI3L5_14440)	-	3184005..3184631 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACI3L5_RS14445 (ACI3L5_14445)	surE	3184631..3185407 (-)	777	WP_080765350.1	5'/3'-nucleotidase SurE	-
ACI3L5_RS14450 (ACI3L5_14450)	truD	3185407..3186450 (-)	1044	WP_050909998.1	tRNA pseudouridine(13) synthase TruD	-
ACI3L5_RS14455 (ACI3L5_14455)	ispF	3186496..3186972 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3L5_RS14460 (ACI3L5_14460)	ispD	3186987..3187697 (-)	711	WP_005531669.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI3L5_RS14465 (ACI3L5_14465)	ftsB	3187699..3187980 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1071977 ACI3L5_RS14430 WP_005425361.1 3182000..3182986(-) (rpoS) [Vibrio campbellii strain LB10]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1071977 ACI3L5_RS14430 WP_005425361.1 3182000..3182986(-) (rpoS) [Vibrio campbellii strain LB10]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACGCCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857