Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACI3L5_RS14300 Genome accession   NZ_CP173389
Coordinates   3159728..3160246 (-) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3154728..3165246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS14275 (ACI3L5_14275) rimM 3154784..3155332 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  ACI3L5_RS14280 (ACI3L5_14280) rpsP 3155360..3155608 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  ACI3L5_RS14285 (ACI3L5_14285) ffh 3155819..3157201 (-) 1383 WP_404973276.1 signal recognition particle protein -
  ACI3L5_RS14290 (ACI3L5_14290) - 3157415..3158209 (+) 795 WP_005426660.1 inner membrane protein YpjD -
  ACI3L5_RS14295 (ACI3L5_14295) - 3158365..3159639 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  ACI3L5_RS14300 (ACI3L5_14300) luxS 3159728..3160246 (-) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  ACI3L5_RS14305 (ACI3L5_14305) - 3160336..3160941 (-) 606 WP_005438049.1 hypothetical protein -
  ACI3L5_RS14310 (ACI3L5_14310) gshA 3160961..3162529 (-) 1569 WP_005426650.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=1071974 ACI3L5_RS14300 WP_005426655.1 3159728..3160246(-) (luxS) [Vibrio campbellii strain LB10]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1071974 ACI3L5_RS14300 WP_005426655.1 3159728..3160246(-) (luxS) [Vibrio campbellii strain LB10]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
AATGGAAGACGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCTAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment