Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACI3L5_RS12035 Genome accession   NZ_CP173389
Coordinates   2650715..2652118 (-) Length   467 a.a.
NCBI ID   WP_005433212.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2645715..2657118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS12000 (ACI3L5_12000) moaE 2646247..2646702 (-) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -
  ACI3L5_RS12005 (ACI3L5_12005) moaD 2646704..2646961 (-) 258 WP_005433220.1 molybdopterin synthase sulfur carrier subunit -
  ACI3L5_RS12010 (ACI3L5_12010) moaC 2646961..2647437 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACI3L5_RS12015 (ACI3L5_12015) moaB 2647464..2647976 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  ACI3L5_RS12020 (ACI3L5_12020) moaA 2648077..2649066 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  ACI3L5_RS12025 (ACI3L5_12025) - 2649364..2650257 (+) 894 WP_005531401.1 YvcK family protein -
  ACI3L5_RS12030 (ACI3L5_12030) luxU 2650374..2650718 (-) 345 WP_045400708.1 quorum-sensing phosphorelay protein LuxU -
  ACI3L5_RS12035 (ACI3L5_12035) luxO 2650715..2652118 (-) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACI3L5_RS12040 (ACI3L5_12040) uvrB 2652461..2654491 (-) 2031 WP_404973172.1 excinuclease ABC subunit UvrB -
  ACI3L5_RS12050 (ACI3L5_12050) - 2655297..2655743 (-) 447 WP_404973173.1 hypothetical protein -
  ACI3L5_RS12055 (ACI3L5_12055) - 2655763..2657094 (-) 1332 WP_045400701.1 hypothetical protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52136.65 Da        Isoelectric Point: 5.8849

>NTDB_id=1071967 ACI3L5_RS12035 WP_005433212.1 2650715..2652118(-) (luxO) [Vibrio campbellii strain LB10]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1071967 ACI3L5_RS12035 WP_005433212.1 2650715..2652118(-) (luxO) [Vibrio campbellii strain LB10]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTTATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
CTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCACCGCA
TTCCTGATCTTATCCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGCACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGTAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAGCTCTGTGAAATGGATCTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGGAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTAGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCATCTTCCACCGCTGCGTGAG
CGTGGTGAAGACGTGATTGAAATTGCATACTCGCTGCTTGGTTATATGTCGCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment