Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACI3L5_RS08050 Genome accession   NZ_CP173389
Coordinates   1760769..1762190 (-) Length   473 a.a.
NCBI ID   WP_079402360.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755769..1767190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS08025 (ACI3L5_08025) purT 1756359..1757534 (-) 1176 WP_038890349.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACI3L5_RS08030 (ACI3L5_08030) - 1757743..1758441 (+) 699 WP_050913412.1 hypothetical protein -
  ACI3L5_RS08035 (ACI3L5_08035) cdd 1758505..1759392 (-) 888 WP_404973650.1 cytidine deaminase -
  ACI3L5_RS08040 (ACI3L5_08040) - 1759657..1760334 (-) 678 WP_005428010.1 LrgB family protein -
  ACI3L5_RS08045 (ACI3L5_08045) - 1760336..1760710 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  ACI3L5_RS08050 (ACI3L5_08050) sbcB 1760769..1762190 (-) 1422 WP_079402360.1 exodeoxyribonuclease I Machinery gene
  ACI3L5_RS08055 (ACI3L5_08055) - 1762352..1763032 (-) 681 WP_079402359.1 DUF1826 domain-containing protein -
  ACI3L5_RS08060 (ACI3L5_08060) - 1763258..1764631 (-) 1374 WP_404973651.1 L-cystine transporter -
  ACI3L5_RS08065 (ACI3L5_08065) - 1764825..1765520 (-) 696 WP_404973652.1 NAD(P)H-binding protein -
  ACI3L5_RS08070 (ACI3L5_08070) - 1766186..1766797 (+) 612 WP_404973653.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54497.74 Da        Isoelectric Point: 4.8733

>NTDB_id=1071964 ACI3L5_RS08050 WP_079402360.1 1760769..1762190(-) (sbcB) [Vibrio campbellii strain LB10]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAQDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1071964 ACI3L5_RS08050 WP_079402360.1 1760769..1762190(-) (sbcB) [Vibrio campbellii strain LB10]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGAATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGCAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAATAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAACTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACTCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment