Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACI3L7_RS25285 Genome accession   NZ_CP173388
Coordinates   2034184..2035365 (+) Length   393 a.a.
NCBI ID   WP_103414332.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2029184..2040365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS25275 (ACI3L7_25275) - 2031524..2032510 (+) 987 WP_045369059.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACI3L7_RS25280 (ACI3L7_25280) ylqF 2032831..2033775 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  ACI3L7_RS25285 (ACI3L7_25285) cqsA 2034184..2035365 (+) 1182 WP_103414332.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACI3L7_RS25290 (ACI3L7_25290) cqsS 2035472..2037517 (-) 2046 WP_404971321.1 response regulator Regulator
  ACI3L7_RS25295 (ACI3L7_25295) - 2037821..2038438 (+) 618 WP_038891692.1 HAD family phosphatase -
  ACI3L7_RS25300 (ACI3L7_25300) - 2038778..2039326 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44043.00 Da        Isoelectric Point: 5.8422

>NTDB_id=1071943 ACI3L7_RS25285 WP_103414332.1 2034184..2035365(+) (cqsA) [Vibrio campbellii strain LB135]
MSDNPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1071943 ACI3L7_RS25285 WP_103414332.1 2034184..2035365(+) (cqsA) [Vibrio campbellii strain LB135]
ATGAGTGATAATCCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCGTGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATT
TCTTTGCACACATGTCTTTGTGGGAAGGTATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTATCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGC
ATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGGCCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCACAA
ATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAACGAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment