Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   ACI3L7_RS22520 Genome accession   NZ_CP173388
Coordinates   1396200..1397297 (+) Length   365 a.a.
NCBI ID   WP_404970617.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 1391200..1402297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS22490 (ACI3L7_22490) - 1391443..1392432 (+) 990 WP_404970615.1 Gfo/Idh/MocA family protein -
  ACI3L7_RS22495 (ACI3L7_22495) - 1392526..1393863 (-) 1338 WP_404970616.1 MATE family efflux transporter -
  ACI3L7_RS22500 (ACI3L7_22500) - 1393987..1394301 (-) 315 WP_005373603.1 DUF496 family protein -
  ACI3L7_RS22505 (ACI3L7_22505) - 1394540..1394743 (+) 204 WP_005433391.1 hypothetical protein -
  ACI3L7_RS22510 (ACI3L7_22510) - 1394837..1395490 (+) 654 WP_045457142.1 YceH family protein -
  ACI3L7_RS22515 (ACI3L7_22515) - 1395487..1395801 (+) 315 WP_045370577.1 GIY-YIG nuclease family protein -
  ACI3L7_RS22520 (ACI3L7_22520) luxP 1396200..1397297 (+) 1098 WP_404970617.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACI3L7_RS22525 (ACI3L7_22525) luxQ 1397297..1399876 (+) 2580 WP_005433394.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ACI3L7_RS22530 (ACI3L7_22530) - 1399989..1400651 (-) 663 WP_258471266.1 PilZ domain-containing protein -
  ACI3L7_RS22535 (ACI3L7_22535) - 1400745..1401671 (-) 927 WP_258471267.1 DMT family transporter -
  ACI3L7_RS22540 (ACI3L7_22540) - 1401821..1402276 (+) 456 WP_258471268.1 Lrp/AsnC family transcriptional regulator -

Sequence


Protein


Download         Length: 365 a.a.        Molecular weight: 41467.79 Da        Isoelectric Point: 5.4779

>NTDB_id=1071941 ACI3L7_RS22520 WP_404970617.1 1396200..1397297(+) (luxP) [Vibrio campbellii strain LB135]
MKKALLFSLISMVGFSPASQATQVLNGYWGYQEFLDEFPEQRNLTNALSEAVREQPVPLSKPTKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEDKPVPTVYSGDFEIVTKSDSPERIEALKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1071941 ACI3L7_RS22520 WP_404970617.1 1396200..1397297(+) (luxP) [Vibrio campbellii strain LB135]
ATGAAGAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTTTCTCCAGCGTCTCAAGCAACACAAGTTTTGAATGG
GTACTGGGGTTATCAAGAGTTTTTGGACGAATTTCCCGAGCAACGAAATCTCACCAATGCTTTATCAGAAGCAGTACGAG
AACAGCCGGTCCCTCTGTCTAAACCGACAAAACGCCCGCTTAAAATATCAGTGGTTTACCCAGGGCAGCAAGTTTCAGAT
TACTGGGTAAGAAATATTGCAGCATTCGAAAAACGTTTGGATAAGTTGAATATTAACTACCAACTGAACCAAGTGTTTAC
TCGTCCAAATGCTGATATCAAGCAACAAAGCTTGTCATTAATGGAAGCGCTCAAGAGCAAATCGGATTACTTGATTTTCA
CGCTTGATACGACAAGACACCGTAAATTTGTTGAGCACGTTTTGGACTCAACGAACACCAAATTGATCTTGCAAAATATC
ACTACACCAGTCCGTGAGTGGGACAAACATCAACCGTTTTTATATGTCGGATTTGACCACGCAGAAGGCAGTCGTGAATT
AGCAACAGAATTCGGAAAGTTCTTCCCAAAACACACATATTACAGTGTGCTCTACTTTTCTGAAGGTTATATTAGCGATG
TGAGAGGTGATACTTTTATTCACCAAGTAAACCGTGATAATAACTTTGAGCTACAATCAGCGTATTACACGAAGGCAACC
AAGCAATCCGGCTATGATGCTGCGAAAGCGAGTTTAGCAAAACATCCAGATGTTGATTTTATCTATGCATGTTCGACCGA
CGTAGCATTGGGTGCAGTAGACGCACTGGCTGAGTTGGGACGTGAAGATATTATGATCAATGGCTGGGGTGGAGGCTCTG
CTGAGTTAGACGCTATCCAGAAGGGTGATTTAGACATCACCGTCATGCGTATGAATGATGACACTGGCATAGCCATGGCA
GAAGCGATTAAGTGGGACTTGGAAGATAAACCAGTTCCGACCGTATACTCAGGTGACTTTGAAATCGTAACAAAGTCAGA
TTCACCGGAGAGAATCGAAGCGCTGAAAAAGCGCGCATTTAGATATTCAGATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.462

99.726

0.633


Multiple sequence alignment