Detailed information NTG1071906

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3L7_RS01040
• Genome accession: NZ_CP173387
• Coordinates: 239762..240748 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LB135
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 234762..245748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L7_RS01025 (ACI3L7_01025)	recA	235299..236342 (-)	1044	WP_005425359.1	recombinase RecA	Machinery gene
ACI3L7_RS01030 (ACI3L7_01030)	pncC	236543..237025 (-)	483	WP_005425360.1	nicotinamide-nucleotide amidase	-
ACI3L7_RS01035 (ACI3L7_01035)	mutS	237111..239672 (+)	2562	WP_103412691.1	DNA mismatch repair protein MutS	-
ACI3L7_RS01040 (ACI3L7_01040)	rpoS	239762..240748 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
ACI3L7_RS01045 (ACI3L7_01045)	-	240829..241752 (-)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACI3L7_RS01050 (ACI3L7_01050)	-	241767..242393 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACI3L7_RS01055 (ACI3L7_01055)	surE	242393..243169 (-)	777	WP_404970145.1	5'/3'-nucleotidase SurE	-
ACI3L7_RS01060 (ACI3L7_01060)	truD	243169..244212 (-)	1044	WP_045421902.1	tRNA pseudouridine(13) synthase TruD	-
ACI3L7_RS01065 (ACI3L7_01065)	ispF	244258..244734 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3L7_RS01070 (ACI3L7_01070)	ispD	244749..245459 (-)	711	WP_404970146.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI3L7_RS01075 (ACI3L7_01075)	ftsB	245461..245742 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1071906 ACI3L7_RS01040 WP_005425361.1 239762..240748(-) (rpoS) [Vibrio campbellii strain LB135]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1071906 ACI3L7_RS01040 WP_005425361.1 239762..240748(-) (rpoS) [Vibrio campbellii strain LB135]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAATCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGTAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGTAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTA
TTAGCTCTGTCGACACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAATAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GTGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857