Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACI3L7_RS00910 Genome accession   NZ_CP173387
Coordinates   217489..218007 (-) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 212489..223007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS00885 (ACI3L7_00885) rimM 212545..213093 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  ACI3L7_RS00890 (ACI3L7_00890) rpsP 213121..213369 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  ACI3L7_RS00895 (ACI3L7_00895) ffh 213580..214962 (-) 1383 WP_005462555.1 signal recognition particle protein -
  ACI3L7_RS00900 (ACI3L7_00900) - 215176..215970 (+) 795 WP_005426660.1 inner membrane protein YpjD -
  ACI3L7_RS00905 (ACI3L7_00905) - 216126..217400 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  ACI3L7_RS00910 (ACI3L7_00910) luxS 217489..218007 (-) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  ACI3L7_RS00915 (ACI3L7_00915) - 218097..218660 (-) 564 WP_012128887.1 hypothetical protein -
  ACI3L7_RS00920 (ACI3L7_00920) gshA 218722..220290 (-) 1569 WP_404970140.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=1071903 ACI3L7_RS00910 WP_005426655.1 217489..218007(-) (luxS) [Vibrio campbellii strain LB135]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1071903 ACI3L7_RS00910 WP_005426655.1 217489..218007(-) (luxS) [Vibrio campbellii strain LB135]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCCAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCTGC
GATGGAAGACGTACTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATTGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment