Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACI3L9_RS06910 Genome accession   NZ_CP173385
Coordinates   1533842..1534417 (-) Length   191 a.a.
NCBI ID   WP_005432710.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528842..1539417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS06885 (ACI3L9_06885) aroB 1529135..1530235 (-) 1101 WP_045380637.1 3-dehydroquinate synthase -
  ACI3L9_RS06890 (ACI3L9_06890) aroK 1530267..1530785 (-) 519 WP_010443904.1 shikimate kinase AroK -
  ACI3L9_RS06895 (ACI3L9_06895) pilQ 1530974..1532716 (-) 1743 WP_050906101.1 type IV pilus secretin PilQ Machinery gene
  ACI3L9_RS06900 (ACI3L9_06900) pilP 1532751..1533266 (-) 516 WP_005432702.1 pilus assembly protein PilP Machinery gene
  ACI3L9_RS06905 (ACI3L9_06905) pilO 1533256..1533849 (-) 594 WP_005432718.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACI3L9_RS06910 (ACI3L9_06910) pilN 1533842..1534417 (-) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  ACI3L9_RS06915 (ACI3L9_06915) pilM 1534401..1535417 (-) 1017 WP_005432712.1 type IV pilus biogenesis protein PilM Machinery gene
  ACI3L9_RS06920 (ACI3L9_06920) - 1535596..1538163 (+) 2568 WP_047482703.1 penicillin-binding protein 1A -
  ACI3L9_RS06925 (ACI3L9_06925) oxyR 1538241..1539149 (-) 909 WP_005432705.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22194.53 Da        Isoelectric Point: 9.4267

>NTDB_id=1071868 ACI3L9_RS06910 WP_005432710.1 1533842..1534417(-) (pilN) [Vibrio campbellii strain LB198]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1071868 ACI3L9_RS06910 WP_005432710.1 1533842..1534417(-) (pilN) [Vibrio campbellii strain LB198]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTCCATTGTC
CATGGTAAGGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTTATGTTTAAAGATGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

99.476

100

0.995
  pilN Vibrio cholerae strain A1552

60.452

92.67

0.56

Multiple sequence alignment