Detailed information NTG1071859

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3L9_RS05830
• Genome accession: NZ_CP173385
• Coordinates: 1318766..1319752 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LB198
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1313766..1324752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L9_RS05815 (ACI3L9_05815)	recA	1314304..1315347 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
ACI3L9_RS05820 (ACI3L9_05820)	pncC	1315548..1316030 (-)	483	WP_045384579.1	nicotinamide-nucleotide amidase	-
ACI3L9_RS05825 (ACI3L9_05825)	mutS	1316116..1318677 (+)	2562	WP_079400980.1	DNA mismatch repair protein MutS	-
ACI3L9_RS05830 (ACI3L9_05830)	rpoS	1318766..1319752 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
ACI3L9_RS05835 (ACI3L9_05835)	-	1319833..1320756 (-)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACI3L9_RS05840 (ACI3L9_05840)	-	1320771..1321397 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACI3L9_RS05845 (ACI3L9_05845)	surE	1321397..1322173 (-)	777	WP_079400979.1	5'/3'-nucleotidase SurE	-
ACI3L9_RS05850 (ACI3L9_05850)	truD	1322173..1323216 (-)	1044	WP_079400978.1	tRNA pseudouridine(13) synthase TruD	-
ACI3L9_RS05855 (ACI3L9_05855)	ispF	1323262..1323738 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3L9_RS05860 (ACI3L9_05860)	ispD	1323753..1324463 (-)	711	WP_079400977.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI3L9_RS05865 (ACI3L9_05865)	ftsB	1324465..1324746 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1071859 ACI3L9_RS05830 WP_005425361.1 1318766..1319752(-) (rpoS) [Vibrio campbellii strain LB198]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1071859 ACI3L9_RS05830 WP_005425361.1 1318766..1319752(-) (rpoS) [Vibrio campbellii strain LB198]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTATTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857