Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACI3L9_RS05700 Genome accession   NZ_CP173385
Coordinates   1296480..1296998 (-) Length   172 a.a.
NCBI ID   WP_079400985.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291480..1301998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS05675 (ACI3L9_05675) rimM 1291536..1292084 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  ACI3L9_RS05680 (ACI3L9_05680) rpsP 1292112..1292360 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  ACI3L9_RS05685 (ACI3L9_05685) ffh 1292571..1293953 (-) 1383 WP_005462555.1 signal recognition particle protein -
  ACI3L9_RS05690 (ACI3L9_05690) - 1294167..1294961 (+) 795 WP_045421886.1 inner membrane protein YpjD -
  ACI3L9_RS05695 (ACI3L9_05695) - 1295117..1296391 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  ACI3L9_RS05700 (ACI3L9_05700) luxS 1296480..1296998 (-) 519 WP_079400985.1 S-ribosylhomocysteine lyase Regulator
  ACI3L9_RS05705 (ACI3L9_05705) - 1297089..1297652 (-) 564 WP_012128887.1 hypothetical protein -
  ACI3L9_RS05710 (ACI3L9_05710) gshA 1297714..1299282 (-) 1569 WP_012128888.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19114.90 Da        Isoelectric Point: 4.7297

>NTDB_id=1071856 ACI3L9_RS05700 WP_079400985.1 1296480..1296998(-) (luxS) [Vibrio campbellii strain LB198]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELV
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1071856 ACI3L9_RS05700 WP_079400985.1 1296480..1296998(-) (luxS) [Vibrio campbellii strain LB198]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTAGCGGTGAATAAGAATGATGAATTGGTA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment