Detailed information NTG1071820

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3L6_RS11280
• Genome accession: NZ_CP173383
• Coordinates: 2562322..2563308 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LB314
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2557322..2568308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L6_RS11265 (ACI3L6_11265)	recA	2557860..2558903 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
ACI3L6_RS11270 (ACI3L6_11270)	pncC	2559104..2559586 (-)	483	WP_045384579.1	nicotinamide-nucleotide amidase	-
ACI3L6_RS11275 (ACI3L6_11275)	mutS	2559672..2562233 (+)	2562	WP_079400980.1	DNA mismatch repair protein MutS	-
ACI3L6_RS11280 (ACI3L6_11280)	rpoS	2562322..2563308 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
ACI3L6_RS11285 (ACI3L6_11285)	-	2563389..2564312 (-)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACI3L6_RS11290 (ACI3L6_11290)	-	2564327..2564953 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACI3L6_RS11295 (ACI3L6_11295)	surE	2564953..2565729 (-)	777	WP_079400979.1	5'/3'-nucleotidase SurE	-
ACI3L6_RS11300 (ACI3L6_11300)	truD	2565729..2566772 (-)	1044	WP_079400978.1	tRNA pseudouridine(13) synthase TruD	-
ACI3L6_RS11305 (ACI3L6_11305)	ispF	2566818..2567294 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3L6_RS11310 (ACI3L6_11310)	ispD	2567309..2568019 (-)	711	WP_079400977.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACI3L6_RS11315 (ACI3L6_11315)	ftsB	2568021..2568302 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1071820 ACI3L6_RS11280 WP_005425361.1 2562322..2563308(-) (rpoS) [Vibrio campbellii strain LB314]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1071820 ACI3L6_RS11280 WP_005425361.1 2562322..2563308(-) (rpoS) [Vibrio campbellii strain LB314]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACTGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTATTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857