Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACI3L6_RS08940 Genome accession   NZ_CP173383
Coordinates   2043667..2045070 (-) Length   467 a.a.
NCBI ID   WP_005433212.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB314     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2038667..2050070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS08905 (ACI3L6_08905) moaE 2039199..2039654 (-) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -
  ACI3L6_RS08910 (ACI3L6_08910) moaD 2039656..2039913 (-) 258 WP_009707280.1 molybdopterin synthase sulfur carrier subunit -
  ACI3L6_RS08915 (ACI3L6_08915) moaC 2039913..2040389 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACI3L6_RS08920 (ACI3L6_08920) moaB 2040416..2040928 (-) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  ACI3L6_RS08925 (ACI3L6_08925) moaA 2041029..2042018 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  ACI3L6_RS08930 (ACI3L6_08930) - 2042316..2043209 (+) 894 WP_005531401.1 YvcK family protein -
  ACI3L6_RS08935 (ACI3L6_08935) luxU 2043326..2043670 (-) 345 WP_038889851.1 quorum-sensing phosphorelay protein LuxU -
  ACI3L6_RS08940 (ACI3L6_08940) luxO 2043667..2045070 (-) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACI3L6_RS08945 (ACI3L6_08945) uvrB 2045413..2047443 (-) 2031 WP_079402223.1 excinuclease ABC subunit UvrB -
  ACI3L6_RS08955 (ACI3L6_08955) - 2048255..2048695 (-) 441 WP_038889848.1 hypothetical protein -
  ACI3L6_RS08960 (ACI3L6_08960) - 2048715..2050046 (-) 1332 WP_079402224.1 excinuclease ABC subunit B -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52136.65 Da        Isoelectric Point: 5.8849

>NTDB_id=1071811 ACI3L6_RS08940 WP_005433212.1 2043667..2045070(-) (luxO) [Vibrio campbellii strain LB314]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=1071811 ACI3L6_RS08940 WP_005433212.1 2043667..2045070(-) (luxO) [Vibrio campbellii strain LB314]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGATGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACCTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGCTTCCGTGAAGACTTGTATTACCGCTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCGTTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829

Multiple sequence alignment