Detailed information NTG1071794

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACIRUQ_RS09485
• Genome accession: NZ_CP173382
• Coordinates: 1998731..2000122 (-)
• Length: 463 a.a.
• NCBI ID: WP_055290225.1
• Uniprot ID: A0A173TPP5
• Organism: Eubacterium ramulus strain JCM 31335
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1993731..2005122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIRUQ_RS09485 (ACIRUQ_09485)	radA	1998731..2000122 (-)	1392	WP_055290225.1	DNA repair protein RadA	Machinery gene
ACIRUQ_RS09490 (ACIRUQ_09490)	-	2000206..2002653 (-)	2448	WP_055290226.1	ATP-dependent Clp protease ATP-binding subunit	-
ACIRUQ_RS09495 (ACIRUQ_09495)	-	2002776..2003144 (-)	369	WP_022035542.1	GntR family transcriptional regulator	-
ACIRUQ_RS09500 (ACIRUQ_09500)	-	2003320..2004990 (-)	1671	WP_055290227.1	hypothetical protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 50194.77 Da
• Isoelectric Point: 6.2632

>NTDB_id=1071794 ACIRUQ_RS09485 WP_055290225.1 1998731..2000122(-) (radA) [Eubacterium ramulus strain JCM 31335]
MAKAKKTIFFCQQCGYETAKWMGQCPGCREWNTFVEEPAEEKHAGISTGNRRNTQSVEPMPLSRVEMTDQERFTTGIGEL
DRVLGGGIVPASLVLVGGDPGIGKSTLLLQVCKNLADAHHSVLYISGEESLQQIKIRADRIGSFTESLELFCETNLADIS
SVLRRKKPRVVIIDSIQTMYSEEVSSAPGSVSQVRQATSLLLQLAKSLGITIFIVGHVTKEGVVAGPRVLEHMVDTVLYF
EGDRHAAYRILRSVKNRFGSTNEIGVFEMQQVGLVEVENPSEYMLNGRPEGASGSIVTCSIEGTRPILLEIQALVCKTGF
GLPRRTAAGADLNRVNLLMAVLEKRAGIPLSSCDAYVNIAGGIRMNEPAIDLGIILAIVSSYRELAISDKTICFGEVGLS
GEVRAVNMAKQRVQEAKKLGFETCILPKVSLTDEVRTDGIRLIGVSNVREAISCISDGSSISD

Nucleotide

• Length: 1392 bp

>NTDB_id=1071794 ACIRUQ_RS09485 WP_055290225.1 1998731..2000122(-) (radA) [Eubacterium ramulus strain JCM 31335]
ATGGCAAAAGCGAAAAAGACGATATTTTTCTGTCAGCAGTGTGGCTATGAGACTGCAAAATGGATGGGACAGTGTCCGGG
CTGCCGGGAGTGGAATACATTTGTAGAAGAACCGGCGGAGGAAAAGCATGCCGGAATCAGCACAGGCAACCGGCGGAATA
CCCAGAGTGTGGAACCAATGCCGCTGTCCAGAGTGGAAATGACCGATCAGGAGCGTTTTACTACCGGAATCGGTGAACTG
GATCGGGTGCTGGGTGGCGGAATCGTACCGGCTTCACTGGTGCTGGTGGGCGGTGATCCGGGAATCGGAAAGTCCACCTT
GCTGCTTCAGGTGTGTAAAAATCTGGCAGATGCGCATCACAGTGTGCTTTATATCTCGGGCGAGGAATCGTTGCAGCAGA
TCAAAATCCGTGCAGACCGAATCGGTTCATTCACAGAATCCTTAGAATTGTTCTGTGAGACAAATCTGGCAGATATTTCC
TCGGTTTTGCGCAGAAAGAAACCACGGGTGGTTATCATTGATTCCATTCAGACCATGTACAGTGAGGAAGTCAGTTCTGC
GCCGGGAAGTGTTTCCCAGGTGCGTCAGGCGACATCTCTGCTGCTTCAGCTGGCAAAATCTCTCGGTATTACGATTTTTA
TCGTCGGACATGTGACAAAAGAAGGTGTGGTGGCCGGCCCGCGTGTGCTGGAACATATGGTGGACACGGTATTGTATTTC
GAGGGAGACCGTCATGCAGCCTACCGGATTCTGCGCAGTGTGAAAAACCGTTTTGGCTCTACGAATGAAATCGGTGTATT
TGAGATGCAGCAGGTGGGACTGGTGGAAGTGGAAAATCCTTCTGAATACATGCTGAACGGGCGGCCGGAGGGGGCTTCCG
GTTCTATCGTCACCTGTTCCATTGAAGGAACGCGGCCAATCCTGCTGGAAATCCAGGCTCTGGTATGTAAGACAGGATTT
GGTCTGCCAAGAAGAACAGCAGCAGGCGCAGACCTGAATCGTGTAAATCTGCTGATGGCGGTACTGGAAAAACGTGCAGG
GATTCCGCTGTCTTCCTGCGATGCCTATGTGAATATCGCGGGCGGCATCCGGATGAACGAACCGGCCATAGATCTCGGCA
TCATTCTTGCCATTGTGTCCAGTTACCGGGAACTTGCTATCTCAGATAAGACGATCTGTTTTGGCGAGGTGGGGCTCAGT
GGTGAAGTCCGCGCCGTCAATATGGCAAAACAAAGGGTACAGGAGGCCAAAAAGCTTGGCTTTGAGACCTGTATCTTACC
AAAAGTATCTCTGACAGATGAAGTCCGTACCGATGGTATCCGTCTGATCGGAGTGTCAAATGTGCGGGAAGCAATATCTT
GTATATCAGATGGAAGTTCAATCTCAGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (72-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• Subunit ChlI of Mg-chelatase (ChlI) (346-428)

3D structure

• AlphaFold DB: A0A173TPP5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.512	97.84	0.553
radA	Streptococcus mitis NCTC 12261	53.93	98.92	0.533
radA	Streptococcus pneumoniae Rx1	53.93	98.92	0.533
radA	Streptococcus pneumoniae D39	53.93	98.92	0.533
radA	Streptococcus pneumoniae R6	53.93	98.92	0.533
radA	Streptococcus pneumoniae TIGR4	53.93	98.92	0.533
radA	Streptococcus mitis SK321	53.93	98.92	0.533