Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACIRUN_RS11775 Genome accession   NZ_CP173381
Coordinates   2366939..2368756 (+) Length   605 a.a.
NCBI ID   WP_005335481.1    Uniprot ID   A0A1C5R189
Organism   Dorea formicigenerans strain JCM 31256     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2361939..2373756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRUN_RS11755 (ACIRUN_11755) - 2362482..2363375 (+) 894 WP_029732125.1 DMT family transporter -
  ACIRUN_RS11760 (ACIRUN_11760) dtd 2363414..2363860 (+) 447 WP_005340750.1 D-aminoacyl-tRNA deacylase -
  ACIRUN_RS11765 (ACIRUN_11765) - 2364144..2364650 (+) 507 WP_005340748.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACIRUN_RS11770 (ACIRUN_11770) - 2364706..2366937 (+) 2232 WP_227143020.1 ABC transporter ATP-binding protein -
  ACIRUN_RS11775 (ACIRUN_11775) rcrQ 2366939..2368756 (+) 1818 WP_005335481.1 ABC transporter ATP-binding protein Regulator
  ACIRUN_RS11780 (ACIRUN_11780) - 2368913..2369875 (+) 963 WP_173785633.1 C39 family peptidase -
  ACIRUN_RS11785 (ACIRUN_11785) - 2370025..2371479 (+) 1455 WP_288165394.1 citrate/2-methylcitrate synthase -
  ACIRUN_RS11790 (ACIRUN_11790) - 2371508..2372122 (+) 615 WP_288165393.1 HD domain-containing protein -
  ACIRUN_RS11795 (ACIRUN_11795) - 2372336..2372980 (-) 645 WP_227078500.1 YkgJ family cysteine cluster protein -
  ACIRUN_RS11800 (ACIRUN_11800) - 2373181..2373489 (+) 309 WP_005335489.1 YerC/YecD family TrpR-related protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67495.20 Da        Isoelectric Point: 6.5750

>NTDB_id=1071783 ACIRUN_RS11775 WP_005335481.1 2366939..2368756(+) (rcrQ) [Dorea formicigenerans strain JCM 31256]
MPRGRMGGRHGMSTEKAKDFKGTMKKLMGYLTQYKIGLLLVVIFAIGSTIFNIAGPKILGKATTELFHGLISKVSGGSGI
DFDKIAKILIGLMCLYVCSALFSFIQGYIMTGVSQKLTYRMRKEISEKIDRLPMGYFDKMTHGEILSRITNDVDTLSQSL
NQSATQVITSVATIIGVLVMMLSISPLMTVIAILILPLSMGLIGMIVKRSQRYFKEQQEYLGYVNGQVEEVYGGHNIVKA
FNKEDDVIDEFDRDNDRLYRSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRNFTQPIQ
QVAQVANMLQSTAAASERVFEFLEEPEEEAAPENPVVLKNPEGAVEFEHVHFGYNPEHTIIHDFSVKVEPGQKIAIVGPT
GAGKTTMVKLLMRFYDVSGGSIKVDGHDIREFDRGELRRMFGMVLQDTWLFKGSIEDNIRYGKLDATHEDVVKAADAAYA
HRFIQTLPGGYGMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMKGRTSFIIAHRL
STIRDADLILVMKEGDIVEMGRHEELLAKNGFYADLYNSQFEQTA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1071783 ACIRUN_RS11775 WP_005335481.1 2366939..2368756(+) (rcrQ) [Dorea formicigenerans strain JCM 31256]
ATGCCAAGAGGACGTATGGGTGGCAGACACGGTATGAGCACCGAAAAAGCCAAAGATTTTAAAGGTACCATGAAGAAGCT
TATGGGATATCTTACACAGTATAAGATAGGTCTTCTCCTTGTAGTGATATTTGCAATAGGAAGTACTATATTTAATATTG
CAGGACCGAAGATTCTTGGAAAAGCAACAACAGAACTATTTCATGGACTGATAAGTAAAGTTTCCGGTGGAAGTGGAATT
GATTTTGATAAGATCGCAAAGATTCTCATCGGACTGATGTGCCTGTATGTGTGCAGTGCATTGTTCTCATTTATCCAGGG
ATACATTATGACAGGAGTTTCCCAGAAACTGACTTACAGAATGAGAAAAGAGATTTCGGAAAAGATTGACAGACTTCCGA
TGGGATATTTTGACAAGATGACACATGGTGAGATTCTTTCACGAATTACAAATGATGTGGATACTTTAAGCCAGAGTCTG
AACCAAAGTGCGACACAGGTTATTACTTCTGTTGCGACAATCATTGGAGTACTGGTCATGATGCTCAGCATCAGTCCGCT
TATGACAGTGATTGCAATTTTAATCCTTCCACTTTCCATGGGGCTGATCGGAATGATCGTGAAGCGTTCCCAGAGATATT
TCAAGGAACAGCAGGAGTATCTTGGATATGTTAATGGACAGGTAGAAGAGGTCTATGGCGGACATAATATTGTAAAGGCA
TTTAATAAAGAAGACGATGTCATAGATGAATTTGACAGAGATAATGACAGACTGTATCGTTCTGCATGGAAATCACAGTT
CTTATCCGGAATGATGATGCCGATCATGCAGTTCGTTGGAAACCTGGGATATGTTGCAGTTGTAATTCTTGGTGGTTATC
TGGCAATTAAGAAGACTATTGAAGTCGGAGATATCCAGTCATTTATCCAGTATGTGAGAAATTTTACACAGCCGATCCAG
CAGGTGGCACAGGTGGCAAATATGCTCCAGTCTACAGCGGCCGCTTCTGAGAGAGTGTTTGAGTTCTTAGAAGAGCCGGA
AGAAGAGGCAGCACCAGAAAATCCGGTTGTATTAAAGAATCCAGAAGGAGCTGTAGAATTTGAGCATGTTCATTTTGGCT
ACAATCCGGAGCATACAATTATTCATGATTTCAGTGTAAAAGTAGAACCTGGACAGAAAATTGCAATTGTAGGACCGACC
GGAGCCGGCAAGACAACGATGGTAAAATTACTGATGCGTTTTTATGATGTGTCAGGTGGTTCCATCAAGGTAGATGGACA
TGATATCCGCGAGTTTGACAGAGGAGAACTGCGTCGTATGTTTGGTATGGTACTTCAGGATACATGGCTGTTCAAAGGAA
GTATTGAAGACAATATCCGTTATGGCAAATTGGATGCTACACATGAAGATGTGGTGAAAGCAGCGGATGCAGCTTATGCA
CACCGGTTTATCCAGACTCTGCCGGGTGGATATGGTATGGAGCTGAATGAAGAGGCAAGTAATGTATCCCAGGGACAGAA
ACAGCTTCTGACGATTGCAAGAGCGATTCTTGCAGATCCGAAGATTTTGATCTTAGATGAGGCTACAAGTTCGGTCGATA
CACGTACTGAGGTGCGTATTCAGAAAGCAATGGATAACCTGATGAAAGGGCGCACAAGCTTTATTATCGCGCACCGTCTG
TCTACGATTCGTGACGCAGATCTGATCCTGGTCATGAAAGAGGGAGATATCGTGGAGATGGGCAGACATGAAGAACTACT
TGCGAAAAATGGATTCTATGCGGATCTGTATAATTCACAGTTTGAACAGACTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-318)

ABC transporter (ABC_tran)

(382-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C5R189

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.257

96.364

0.484

Multiple sequence alignment