Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   ACI1GX_RS07180 Genome accession   NZ_CP173358
Coordinates   1573629..1573922 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain APL2305225E     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1568629..1578922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI1GX_RS07150 (ACI1GX_07140) artM 1568961..1569644 (-) 684 WP_005605188.1 arginine ABC transporter permease ArtM -
  ACI1GX_RS07155 (ACI1GX_07145) artQ 1569644..1570315 (-) 672 WP_237593313.1 arginine ABC transporter permease ArtQ -
  ACI1GX_RS07160 (ACI1GX_07150) - 1570321..1571040 (-) 720 WP_005619670.1 transporter substrate-binding domain-containing protein -
  ACI1GX_RS07165 (ACI1GX_07155) artP 1571060..1571794 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  ACI1GX_RS07170 (ACI1GX_07160) - 1572019..1572516 (-) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  ACI1GX_RS07175 (ACI1GX_07165) - 1572589..1573551 (+) 963 WP_005619672.1 calcium/sodium antiporter -
  ACI1GX_RS07180 (ACI1GX_07170) HI0659 1573629..1573922 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  ACI1GX_RS07185 (ACI1GX_07175) - 1573903..1574274 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACI1GX_RS07190 (ACI1GX_07180) - 1574468..1576219 (+) 1752 WP_043948002.1 protein-disulfide reductase DsbD -
  ACI1GX_RS07195 (ACI1GX_07185) - 1576277..1576846 (+) 570 WP_005605204.1 elongation factor P hydroxylase -
  ACI1GX_RS07200 (ACI1GX_07190) rsmI 1576890..1577744 (-) 855 WP_005598486.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence


Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=1071600 ACI1GX_RS07180 WP_005598477.1 1573629..1573922(-) (HI0659) [Actinobacillus pleuropneumoniae strain APL2305225E]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1071600 ACI1GX_RS07180 WP_005598477.1 1573629..1573922(-) (HI0659) [Actinobacillus pleuropneumoniae strain APL2305225E]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains


Predicted by InterproScan.

(35-86)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619


Multiple sequence alignment