Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABE75_RS15765 Genome accession   NZ_AP028869
Coordinates   3212001..3212630 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JBEHAAB-19-0176     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3207001..3217630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABE75_RS15750 helD 3207243..3209297 (-) 2055 WP_022645482.1 DNA helicase IV -
  AABE75_RS15755 yccF 3209420..3209866 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABE75_RS15760 yccS 3209876..3212038 (+) 2163 WP_000875041.1 YccS family putative transporter -
  AABE75_RS15765 sxy/tfoX 3212001..3212630 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABE75_RS15770 sulA 3212849..3213358 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  AABE75_RS15775 ompA 3213715..3214755 (+) 1041 WP_022645481.1 porin OmpA -
  AABE75_RS15780 matP 3214832..3215284 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABE75_RS15785 ycbZ 3215470..3217230 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=107158 AABE75_RS15765 WP_000839153.1 3212001..3212630(-) (sxy/tfoX) [Escherichia coli strain JBEHAAB-19-0176]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=107158 AABE75_RS15765 WP_000839153.1 3212001..3212630(-) (sxy/tfoX) [Escherichia coli strain JBEHAAB-19-0176]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment