Detailed information
Bioinformatically predicted
Overview
| Name | HI0659 | Type | Machinery gene |
| Locus tag | ACIZ62_RS04310 | Genome accession | NZ_CP173357 |
| Coordinates | 904375..904737 (+) | Length | 120 a.a. |
| NCBI ID | WP_414151295.1 | Uniprot ID | - |
| Organism | Acetobacterium carbinolicum strain DSM 2925 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 863092..903484 | 904375..904737 | flank | 891 |
Gene organization within MGE regions
Location: 863092..904737
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIZ62_RS04085 (ACIZ62_04085) | - | 864627..864977 (+) | 351 | WP_322519518.1 | hypothetical protein | - |
| ACIZ62_RS04090 (ACIZ62_04090) | - | 864974..865390 (+) | 417 | WP_322519517.1 | ATP-binding protein | - |
| ACIZ62_RS04095 (ACIZ62_04095) | - | 865409..866752 (+) | 1344 | WP_322519516.1 | [Fe-Fe] hydrogenase large subunit C-terminal domain-containing protein | - |
| ACIZ62_RS04100 (ACIZ62_04100) | - | 866862..867194 (+) | 333 | WP_111887830.1 | AraC family transcriptional regulator | - |
| ACIZ62_RS04105 (ACIZ62_04105) | - | 867195..867923 (+) | 729 | WP_414151270.1 | PHP domain-containing protein | - |
| ACIZ62_RS04110 (ACIZ62_04110) | - | 868318..868788 (+) | 471 | WP_111887828.1 | complex I 24 kDa subunit family protein | - |
| ACIZ62_RS04115 (ACIZ62_04115) | - | 868798..869355 (+) | 558 | WP_414151271.1 | ATP-binding protein | - |
| ACIZ62_RS04120 (ACIZ62_04120) | - | 869355..869753 (+) | 399 | WP_111887826.1 | (2Fe-2S) ferredoxin domain-containing protein | - |
| ACIZ62_RS04125 (ACIZ62_04125) | nuoF | 869773..871572 (+) | 1800 | WP_414151272.1 | NADH-quinone oxidoreductase subunit NuoF | - |
| ACIZ62_RS04130 (ACIZ62_04130) | - | 871592..873343 (+) | 1752 | WP_111887824.1 | NADH-dependent [FeFe] hydrogenase, group A6 | - |
| ACIZ62_RS04135 (ACIZ62_04135) | - | 873442..875655 (+) | 2214 | WP_414151273.1 | ATP-dependent RecD-like DNA helicase | - |
| ACIZ62_RS04140 (ACIZ62_04140) | - | 875728..876477 (+) | 750 | WP_414151274.1 | ComF family protein | - |
| ACIZ62_RS04145 (ACIZ62_04145) | murB | 876587..877495 (+) | 909 | WP_111887821.1 | UDP-N-acetylmuramate dehydrogenase | - |
| ACIZ62_RS04150 (ACIZ62_04150) | - | 877500..878231 (+) | 732 | WP_111887820.1 | PHP domain-containing protein | - |
| ACIZ62_RS04155 (ACIZ62_04155) | rapZ | 878241..879113 (+) | 873 | WP_414151275.1 | RNase adapter RapZ | - |
| ACIZ62_RS04160 (ACIZ62_04160) | - | 879245..880255 (+) | 1011 | WP_414151276.1 | gluconeogenesis factor YvcK family protein | - |
| ACIZ62_RS04165 (ACIZ62_04165) | whiA | 880344..881354 (+) | 1011 | WP_414151277.1 | DNA-binding protein WhiA | - |
| ACIZ62_RS04170 (ACIZ62_04170) | - | 881525..882103 (-) | 579 | WP_414151278.1 | sigma-70 family RNA polymerase sigma factor | - |
| ACIZ62_RS04175 (ACIZ62_04175) | - | 882358..882582 (-) | 225 | WP_322519508.1 | DUF2922 domain-containing protein | - |
| ACIZ62_RS04180 (ACIZ62_04180) | - | 882620..882844 (-) | 225 | WP_414151279.1 | DUF1659 domain-containing protein | - |
| ACIZ62_RS04185 (ACIZ62_04185) | - | 882997..883392 (-) | 396 | WP_414151280.1 | holin family protein | - |
| ACIZ62_RS04190 (ACIZ62_04190) | - | 883515..884570 (-) | 1056 | WP_414151281.1 | PocR ligand-binding domain-containing protein | - |
| ACIZ62_RS04195 (ACIZ62_04195) | - | 885131..885724 (+) | 594 | WP_414151282.1 | RNA polymerase sigma factor | - |
| ACIZ62_RS04200 (ACIZ62_04200) | - | 885724..886839 (+) | 1116 | WP_414151283.1 | hypothetical protein | - |
| ACIZ62_RS04205 (ACIZ62_04205) | - | 887718..890852 (+) | 3135 | WP_414151284.1 | hypothetical protein | - |
| ACIZ62_RS04210 (ACIZ62_04210) | - | 891031..891162 (-) | 132 | Protein_803 | ATP-binding protein | - |
| ACIZ62_RS04215 (ACIZ62_04215) | istA | 891327..892448 (+) | 1122 | WP_414151285.1 | IS21 family transposase | - |
| ACIZ62_RS04220 (ACIZ62_04220) | - | 893039..893392 (+) | 354 | WP_414151286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ACIZ62_RS04225 (ACIZ62_04225) | HI0659 | 893395..893757 (+) | 363 | WP_414151287.1 | helix-turn-helix domain-containing protein | Machinery gene |
| ACIZ62_RS04230 (ACIZ62_04230) | - | 894164..894397 (+) | 234 | WP_111887801.1 | hypothetical protein | - |
| ACIZ62_RS04235 (ACIZ62_04235) | - | 894438..894545 (+) | 108 | WP_414151288.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ACIZ62_RS04240 (ACIZ62_04240) | - | 894558..895460 (+) | 903 | WP_414151836.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ACIZ62_RS04245 (ACIZ62_04245) | - | 895461..895790 (+) | 330 | WP_414151289.1 | transposase | - |
| ACIZ62_RS04250 (ACIZ62_04250) | - | 895884..896282 (+) | 399 | WP_414151290.1 | hypothetical protein | - |
| ACIZ62_RS04255 (ACIZ62_04255) | - | 896581..897630 (+) | 1050 | WP_414151291.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ACIZ62_RS04260 (ACIZ62_04260) | - | 898354..898671 (+) | 318 | WP_414151292.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ACIZ62_RS04265 (ACIZ62_04265) | - | 898749..899549 (-) | 801 | WP_414151293.1 | ExeA family protein | - |
| ACIZ62_RS04270 (ACIZ62_04270) | - | 899542..900801 (-) | 1260 | WP_414150292.1 | DDE-type integrase/transposase/recombinase | - |
| ACIZ62_RS04275 (ACIZ62_04275) | - | 900948..901484 (-) | 537 | WP_414150291.1 | transposase | - |
| ACIZ62_RS04280 (ACIZ62_04280) | - | 901594..902391 (+) | 798 | WP_414151294.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| ACIZ62_RS04285 (ACIZ62_04285) | - | 902635..902805 (+) | 171 | WP_371414198.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| ACIZ62_RS04290 (ACIZ62_04290) | - | 902723..902911 (+) | 189 | WP_371414224.1 | hypothetical protein | - |
| ACIZ62_RS04295 (ACIZ62_04295) | - | 902908..903192 (+) | 285 | WP_242988636.1 | PIN domain-containing protein | - |
| ACIZ62_RS04300 (ACIZ62_04300) | - | 903638..903883 (-) | 246 | WP_256372209.1 | transposase | - |
| ACIZ62_RS04305 (ACIZ62_04305) | - | 904065..904382 (+) | 318 | WP_204355490.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ACIZ62_RS04310 (ACIZ62_04310) | HI0659 | 904375..904737 (+) | 363 | WP_414151295.1 | helix-turn-helix domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13718.06 Da Isoelectric Point: 10.7136
>NTDB_id=1071576 ACIZ62_RS04310 WP_414151295.1 904375..904737(+) (HI0659) [Acetobacterium carbinolicum strain DSM 2925]
MSKTKVSPIGSSWDEFEKKTFTPEEIMESDLRVALISELIRARNDQGITQKQLEEASGVKQPVIARMEKGTTDPQLMTIL
KILRPLGKTLAIVPIEEKQPRNIHLRTFKKGSTFRQKPMR
MSKTKVSPIGSSWDEFEKKTFTPEEIMESDLRVALISELIRARNDQGITQKQLEEASGVKQPVIARMEKGTTDPQLMTIL
KILRPLGKTLAIVPIEEKQPRNIHLRTFKKGSTFRQKPMR
Nucleotide
Download Length: 363 bp
>NTDB_id=1071576 ACIZ62_RS04310 WP_414151295.1 904375..904737(+) (HI0659) [Acetobacterium carbinolicum strain DSM 2925]
ATGAGTAAGACAAAAGTAAGTCCCATTGGATCAAGCTGGGATGAGTTTGAGAAAAAAACATTCACCCCGGAAGAAATAAT
GGAATCTGATTTGAGAGTAGCATTAATAAGCGAACTAATCCGTGCTAGAAATGATCAGGGAATCACCCAAAAGCAGTTGG
AAGAAGCAAGTGGTGTTAAGCAACCCGTCATTGCCCGAATGGAAAAAGGTACAACTGATCCCCAATTGATGACTATTTTA
AAAATACTAAGACCACTTGGCAAGACCTTGGCCATTGTGCCAATTGAAGAAAAACAACCCCGAAACATTCATTTGAGAAC
ATTTAAAAAAGGCAGCACATTCAGGCAAAAGCCCATGAGATAA
ATGAGTAAGACAAAAGTAAGTCCCATTGGATCAAGCTGGGATGAGTTTGAGAAAAAAACATTCACCCCGGAAGAAATAAT
GGAATCTGATTTGAGAGTAGCATTAATAAGCGAACTAATCCGTGCTAGAAATGATCAGGGAATCACCCAAAAGCAGTTGG
AAGAAGCAAGTGGTGTTAAGCAACCCGTCATTGCCCGAATGGAAAAAGGTACAACTGATCCCCAATTGATGACTATTTTA
AAAATACTAAGACCACTTGGCAAGACCTTGGCCATTGTGCCAATTGAAGAAAAACAACCCCGAAACATTCATTTGAGAAC
ATTTAAAAAAGGCAGCACATTCAGGCAAAAGCCCATGAGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| HI0659 | Haemophilus influenzae Rd KW20 |
65.263 |
79.167 |
0.517 |