Detailed information    

insolico Bioinformatically predicted

Overview


Name   HI0659   Type   Machinery gene
Locus tag   ACIX3D_RS07390 Genome accession   NZ_CP173318
Coordinates   1593390..1593683 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain APL2210214E     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1588390..1598683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIX3D_RS07360 (ACIX3D_07365) artM 1588731..1589414 (-) 684 WP_005598468.1 arginine ABC transporter permease ArtM -
  ACIX3D_RS07365 (ACIX3D_07370) artQ 1589414..1590085 (-) 672 WP_005598470.1 arginine ABC transporter permease ArtQ -
  ACIX3D_RS07370 (ACIX3D_07375) - 1590091..1590810 (-) 720 WP_043991873.1 transporter substrate-binding domain-containing protein -
  ACIX3D_RS07375 (ACIX3D_07380) artP 1590830..1591564 (-) 735 WP_005598473.1 arginine ABC transporter ATP-binding protein ArtP -
  ACIX3D_RS07380 (ACIX3D_07385) - 1591789..1592286 (-) 498 WP_005598474.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  ACIX3D_RS07385 (ACIX3D_07390) - 1592359..1593312 (+) 954 WP_043991874.1 calcium/sodium antiporter -
  ACIX3D_RS07390 (ACIX3D_07395) HI0659 1593390..1593683 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  ACIX3D_RS07395 (ACIX3D_07400) - 1593664..1594035 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIX3D_RS07400 (ACIX3D_07405) - 1594229..1595980 (+) 1752 WP_005598482.1 protein-disulfide reductase DsbD -
  ACIX3D_RS07405 (ACIX3D_07410) - 1596038..1596607 (+) 570 WP_005598484.1 elongation factor P hydroxylase -
  ACIX3D_RS07410 (ACIX3D_07415) rsmI 1596651..1597505 (-) 855 WP_005598486.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence


Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=1071525 ACIX3D_RS07390 WP_005598477.1 1593390..1593683(-) (HI0659) [Actinobacillus pleuropneumoniae strain APL2210214E]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1071525 ACIX3D_RS07390 WP_005598477.1 1593390..1593683(-) (HI0659) [Actinobacillus pleuropneumoniae strain APL2210214E]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGGCTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATCTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains


Predicted by InterproScan.

(35-86)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619


Multiple sequence alignment