Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GGGNBK_RS21615 Genome accession   NZ_CP173271
Coordinates   4479638..4480588 (-) Length   316 a.a.
NCBI ID   WP_149581578.1    Uniprot ID   A0A5B0C442
Organism   Sporosarcina sp. ANT_H38     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4474638..4485588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGGNBK_RS21595 (GGGNBK_22175) zupT 4475679..4476488 (-) 810 WP_149581574.1 zinc transporter ZupT -
  GGGNBK_RS21600 (GGGNBK_22180) - 4476930..4477892 (-) 963 WP_149581575.1 siderophore ABC transporter substrate-binding protein -
  GGGNBK_RS21605 (GGGNBK_22185) - 4477937..4478698 (-) 762 WP_149581576.1 ABC transporter ATP-binding protein -
  GGGNBK_RS21610 (GGGNBK_22190) - 4478695..4479645 (-) 951 WP_149581577.1 iron chelate uptake ABC transporter family permease subunit -
  GGGNBK_RS21615 (GGGNBK_22195) ceuB 4479638..4480588 (-) 951 WP_149581578.1 ABC transporter permease Machinery gene
  GGGNBK_RS21620 (GGGNBK_22200) - 4480858..4481736 (-) 879 WP_149581579.1 DUF6612 family protein -
  GGGNBK_RS21625 (GGGNBK_22205) - 4481962..4483680 (+) 1719 WP_149581580.1 ABC transporter ATP-binding protein -
  GGGNBK_RS21630 (GGGNBK_22210) hflX 4483847..4485118 (-) 1272 WP_149581581.1 GTPase HflX -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34929.31 Da        Isoelectric Point: 10.1976

>NTDB_id=1071363 GGGNBK_RS21615 WP_149581578.1 4479638..4480588(-) (ceuB) [Sporosarcina sp. ANT_H38]
MKIRYLIIALISLSFLSLFVGVSHITPMALLDFKSEETEIFLISRLPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLFFTNASTIEKMIVAFVFALAGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKANVI
QNMSAWLQGDFSMIMKGRYELLYISIPVLIITYLYANRFTVAGMGEDFSKNLGLAYRRIVNIGLVLVALITTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSGIFLFLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1071363 GGGNBK_RS21615 WP_149581578.1 4479638..4480588(-) (ceuB) [Sporosarcina sp. ANT_H38]
ATGAAGATACGTTACTTAATCATCGCACTCATCAGTCTCTCATTCCTATCGTTATTTGTGGGAGTGAGTCATATCACACC
AATGGCTCTGCTTGATTTTAAGTCGGAAGAAACCGAGATTTTCCTAATTAGCCGTCTGCCGCGACTCGTCGCAATTCTCC
TTGCAGGAGCAGGGATGAGTATCGCAGGTCTCATTATGCAGCAGCTGAGCAGGAATAAATTTGTTTCGCCAACGACAGCA
GGTACTTTGGATGCGACACGGCTCGGGATTCTTGTATCGATGCTGTTTTTCACAAACGCATCAACGATTGAAAAGATGAT
TGTCGCATTTGTATTCGCGCTTGCCGGCACGCTACTGTTTATGCAAATTCTTGACCGTATTAAATTCAAGGATGCGATTT
TCATTCCACTCGTCGGGCTTATGTTCGGCAATATTTTGTCTTCAATTACAACGTTTTTTGCTTACAAAGCGAACGTTATC
CAAAATATGTCGGCATGGTTACAAGGCGATTTTTCGATGATTATGAAAGGGCGTTATGAACTTCTATACATAAGCATTCC
CGTGCTAATCATCACTTATTTGTATGCAAACCGTTTTACGGTTGCGGGAATGGGTGAGGATTTTTCGAAAAACCTCGGTC
TTGCTTATAGGCGAATCGTCAATATCGGACTTGTCCTTGTTGCGCTTATTACCACGACTGTCGTCTTGACGGTTGGAATG
ATTCCCTTCCTTGGATTGATCATTCCAAATATCGTTTCTATCTTTAAAGGAGATCATTTACAGAAGACATTGCCTCATAC
AGCCCTGCTAGGCGCGATATTCCTGCTTATCTGTGACATTTTAGGTAGAGTGCTGATCTATCCGTATGAGATTTCAATCA
GTTTGATGGTAGGCGTTATTGGCAGCGGAATATTCCTCTTCTTATTGTTTAGGAGGAAGGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0C442

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

100

0.535

Multiple sequence alignment