Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACG4IY_RS17950 Genome accession   NZ_CP173269
Coordinates   865426..866520 (-) Length   364 a.a.
NCBI ID   WP_000823678.1    Uniprot ID   Q9KLK6
Organism   Vibrio cholerae strain M646     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 860426..871520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IY_RS17930 - 860766..861164 (+) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -
  ACG4IY_RS17935 - 861416..861934 (+) 519 WP_000914961.1 hypothetical protein -
  ACG4IY_RS17940 - 862178..862843 (+) 666 WP_000268204.1 flagellar brake protein -
  ACG4IY_RS17945 luxQ 862835..865408 (-) 2574 WP_001026306.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  ACG4IY_RS17950 luxP 865426..866520 (-) 1095 WP_000823678.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACG4IY_RS17955 traF 866732..867892 (-) 1161 WP_001025860.1 conjugal transfer protein TraF -
  ACG4IY_RS17960 - 867994..868299 (-) 306 WP_000429067.1 GIY-YIG nuclease family protein -
  ACG4IY_RS17965 - 868316..868966 (-) 651 WP_001025631.1 YceH family protein -
  ACG4IY_RS17970 - 869008..869205 (-) 198 WP_001246071.1 hypothetical protein -
  ACG4IY_RS17975 - 869393..869713 (+) 321 WP_001089529.1 DUF496 family protein -
  ACG4IY_RS17980 - 870126..870377 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41196.81 Da        Isoelectric Point: 6.3129

>NTDB_id=1071325 ACG4IY_RS17950 WP_000823678.1 865426..866520(-) (luxP) [Vibrio cholerae strain M646]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKSVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=1071325 ACG4IY_RS17950 WP_000823678.1 865426..866520(-) (luxP) [Vibrio cholerae strain M646]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCTGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCTCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGTTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KLK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment