Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ABXH30_RS13080 Genome accession   NZ_CP173259
Coordinates   2649416..2650216 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain XW38     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2644416..2655216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS13050 (ABXH30_13050) - 2644963..2645595 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  ABXH30_RS13055 (ABXH30_13055) - 2645886..2646023 (+) 138 WP_014470646.1 hypothetical protein -
  ABXH30_RS13060 (ABXH30_13060) - 2646117..2647235 (+) 1119 WP_201489004.1 NADH-dependent flavin oxidoreductase -
  ABXH30_RS13065 (ABXH30_13065) - 2647358..2647573 (+) 216 WP_014305391.1 spore germination protein -
  ABXH30_RS13070 (ABXH30_13070) - 2647699..2647911 (+) 213 WP_014305392.1 spore germination protein -
  ABXH30_RS13075 (ABXH30_13075) alr 2648087..2649268 (+) 1182 WP_014305393.1 alanine racemase -
  ABXH30_RS13080 (ABXH30_13080) spo0A 2649416..2650216 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  ABXH30_RS13085 (ABXH30_13085) spoIVB 2650497..2651777 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  ABXH30_RS13090 (ABXH30_13090) recN 2651941..2653671 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  ABXH30_RS13095 (ABXH30_13095) ahrC 2653703..2654152 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  ABXH30_RS13100 (ABXH30_13100) - 2654249..2655094 (-) 846 WP_015388017.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=1071173 ABXH30_RS13080 WP_003153177.1 2649416..2650216(-) (spo0A) [Bacillus velezensis strain XW38]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1071173 ABXH30_RS13080 WP_003153177.1 2649416..2650216(-) (spo0A) [Bacillus velezensis strain XW38]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment