Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABXH30_RS01790 Genome accession   NZ_CP173259
Coordinates   361660..362097 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain XW38     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356660..367097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS01750 (ABXH30_01750) - 357285..357449 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  ABXH30_RS01755 (ABXH30_01755) - 357563..358765 (+) 1203 WP_057080005.1 GTP-binding protein -
  ABXH30_RS01760 (ABXH30_01760) - 358830..359966 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  ABXH30_RS01765 (ABXH30_01765) - 359981..360415 (+) 435 WP_057080003.1 RDD family protein -
  ABXH30_RS01770 (ABXH30_01770) - 360532..360807 (+) 276 WP_369719109.1 YckD family protein -
  ABXH30_RS01775 (ABXH30_01775) - 360911..361027 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  ABXH30_RS01780 (ABXH30_01780) - 361026..361221 (+) 196 Protein_310 family 1 glycosylhydrolase -
  ABXH30_RS01785 (ABXH30_01785) nin/comJ 361240..361638 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  ABXH30_RS01790 (ABXH30_01790) nucA/comI 361660..362097 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABXH30_RS01795 (ABXH30_01795) hxlB 362456..363013 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  ABXH30_RS01800 (ABXH30_01800) hxlA 363010..363645 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  ABXH30_RS01805 (ABXH30_01805) - 363877..364239 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1071140 ABXH30_RS01790 WP_003156588.1 361660..362097(-) (nucA/comI) [Bacillus velezensis strain XW38]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1071140 ABXH30_RS01790 WP_003156588.1 361660..362097(-) (nucA/comI) [Bacillus velezensis strain XW38]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCAATAAAAGAAGGGCATTCCAGCATTTGCACCATTGATAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment