Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACIRXL_RS00280 Genome accession   NZ_CP173236
Coordinates   57943..60402 (-) Length   819 a.a.
NCBI ID   WP_410681114.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52943..65402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS00260 (ACIRXL_00260) kdsB 53814..54596 (-) 783 WP_410680139.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACIRXL_RS00265 (ACIRXL_00265) - 54593..54775 (-) 183 WP_410680138.1 Trm112 family protein -
  ACIRXL_RS00270 (ACIRXL_00270) lpxK 54950..55960 (-) 1011 WP_410680137.1 tetraacyldisaccharide 4'-kinase -
  ACIRXL_RS00275 (ACIRXL_00275) msbA 55976..57724 (-) 1749 WP_410680136.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACIRXL_RS00280 (ACIRXL_00280) rec2 57943..60402 (-) 2460 WP_410681114.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACIRXL_RS00285 (ACIRXL_00285) thiM 60892..61695 (+) 804 WP_410680135.1 hydroxyethylthiazole kinase -
  ACIRXL_RS00290 (ACIRXL_00290) thiD 61707..62525 (+) 819 WP_264246239.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACIRXL_RS00295 (ACIRXL_00295) thiE 62518..63180 (+) 663 WP_410680134.1 thiamine phosphate synthase -
  ACIRXL_RS00300 (ACIRXL_00300) - 63181..64401 (+) 1221 WP_017805728.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 819 a.a.        Molecular weight: 92338.79 Da        Isoelectric Point: 9.7735

>NTDB_id=1071086 ACIRXL_RS00280 WP_410681114.1 57943..60402(-) (rec2) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MGLRLDTLLWLVIAAGLTLLFVPQSFLLEPKQSAWLAGIAVVGCGVAYWIKRQGLAKFFAYGAIFVLCLADFHYQAQQLL
QQAHAVAGLEKRIEREIRIVEVLHQQDYQTLIATAQLDETLPEQRLYVQWQRAEKVAVGQRWRAELSLRPLSSRLNEGGF
DRQKWYFSKGITAYAKVKSAVKISEDFSWREARLQTAFQHTQALSMQGLLLALGFGERAWLQPTHWQIYQKTNTAHLIAI
SGLHIGLAMLLGVGIARGIQFCLPTYWITPMFPLFIGAIIALIYAYLAGFSIPTLRALVALGLVCLVRGLRFYHTPWQYF
QRVVAVLIFCQPLMVLSVSFWLSVGAVASLILWYQYVPLDLFQPRTDLVRQDRPFSLGAIIGKLILRWCVALLHLQLGLL
LVFTPVQLYFFHGFSLAGMIANVFAVPLFSFFLVPLVLFAVLSNGAFSSWQGANELAEKITIFLSNWQHKWIDLSQTQSQ
WIGLGLCALGLSYVFGLWQVQKNHSLNRQKSIPFIQDRTLAKWKWRLNPDKIPSVLCLKKLGVVLVLIFLVNGRNLLVTH
FRQPDWRLETLDVGQGLATLIVKEQRGILYDTGAAWQNGSMAELEILPYLRRQGIVLDYLILSHDDNDHAGGAEAVLRAY
PNATLITSSEKIERKTHRTFCFAGTQWQWQGLQISALSPQKVVKRAENNDSCVLLIDDGRHKVLLTGDAESQIEPQFIYK
AGKIDVLQVGHHGSKTSTSEALVKTLQPSIALISSGRGNPWHFPHYAVLARLQTQQSAVLNTADFGQIRLSFSANKPPPE
NISIDTARGTFSPWYRELL

Nucleotide


Download         Length: 2460 bp        

>NTDB_id=1071086 ACIRXL_RS00280 WP_410681114.1 57943..60402(-) (rec2) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATTGGCCTGAGGCTCGATACCCTGTTATGGCTTGTGATCGCCGCGGGCTTAACCTTGCTTTTTGTGCCGCAATCTTTTTT
GCTTGAGCCAAAGCAAAGTGCGTGGCTGGCGGGGATTGCGGTGGTGGGCTGTGGTGTTGCCTATTGGATTAAGCGTCAAG
GACTAGCGAAATTTTTCGCCTATGGTGCGATATTTGTGCTATGCCTTGCGGATTTTCATTATCAGGCACAGCAGCTCTTA
CAGCAGGCTCACGCCGTTGCGGGGCTTGAAAAACGCATTGAGCGGGAAATTCGCATTGTCGAAGTACTACATCAGCAAGA
TTATCAAACCCTTATCGCCACCGCTCAGCTTGATGAAACCCTGCCTGAACAACGCCTTTATGTGCAATGGCAAAGGGCGG
AAAAAGTGGCAGTCGGACAGCGTTGGCGAGCGGAATTATCCCTACGTCCATTGTCTAGTCGGCTAAATGAGGGGGGATTT
GATCGGCAAAAATGGTATTTTTCAAAGGGGATTACCGCCTATGCAAAGGTGAAAAGTGCGGTCAAAATTTCGGAGGATTT
TTCTTGGCGGGAAGCAAGGTTACAAACCGCATTTCAGCACACTCAAGCCCTCTCAATGCAAGGGCTATTGCTGGCGTTAG
GATTTGGTGAACGGGCGTGGTTGCAGCCAACTCATTGGCAAATCTACCAAAAAACCAATACCGCTCATCTTATCGCTATT
TCAGGGCTACATATTGGCTTGGCAATGTTGCTTGGCGTTGGCATTGCTCGAGGGATACAATTTTGCTTGCCGACCTATTG
GATCACGCCGATGTTTCCGCTTTTTATTGGGGCAATAATCGCATTGATTTATGCCTATTTAGCGGGATTTTCTATTCCCA
CCCTGCGGGCGTTGGTAGCATTGGGGCTGGTGTGTTTAGTGCGAGGGTTGCGTTTTTATCACACCCCTTGGCAATATTTT
CAGCGGGTGGTAGCAGTGCTGATTTTCTGCCAGCCGTTAATGGTGCTATCGGTGAGTTTTTGGCTATCAGTAGGGGCGGT
AGCAAGTTTGATTTTATGGTATCAATATGTGCCGTTGGATTTGTTTCAGCCACGAACTGATTTAGTCAGGCAGGATCGCC
CGTTCTCTTTAGGGGCAATAATCGGTAAGCTCATACTACGCTGGTGCGTAGCATTGTTGCATTTGCAACTGGGCTTATTG
TTAGTGTTCACCCCCGTTCAGCTTTACTTTTTTCACGGTTTTTCTTTAGCGGGAATGATCGCGAATGTTTTTGCTGTACC
GTTGTTCAGCTTTTTTCTTGTTCCGCTCGTGCTATTTGCGGTACTCAGCAACGGCGCATTTTCTTCTTGGCAAGGAGCAA
ATGAATTGGCAGAAAAGATCACCATTTTTCTGTCAAATTGGCAACATAAATGGATCGATCTTTCCCAAACGCAATCGCAA
TGGATCGGGCTTGGGCTGTGTGCATTGGGGCTGAGCTATGTTTTTGGCTTATGGCAAGTACAGAAAAATCACTCGCTGAA
TAGGCAAAAATCCATTCCGTTCATTCAGGATCGCACTTTGGCAAAATGGAAATGGAGGTTAAACCCTGACAAAATCCCCT
CAGTATTATGCTTAAAAAAGCTAGGTGTTGTACTGGTGCTTATTTTTCTCGTCAATGGCAGAAATTTGTTGGTAACCCAT
TTTCGGCAACCCGATTGGCGGCTTGAAACCCTTGATGTGGGGCAGGGGCTTGCCACCTTGATCGTTAAAGAGCAGCGGGG
GATTTTGTACGATACAGGGGCGGCTTGGCAAAATGGCAGTATGGCAGAATTAGAAATTTTGCCTTATTTACGGCGGCAGG
GCATTGTGCTGGATTACCTTATTTTAAGCCACGACGACAATGATCACGCAGGCGGGGCTGAAGCGGTGTTGCGGGCTTAT
CCCAATGCGACGCTTATTACGTCATCGGAAAAAATCGAGCGAAAAACGCACCGCACTTTTTGTTTCGCGGGAACGCAATG
GCAGTGGCAAGGGTTGCAGATTTCAGCCCTTTCACCGCAAAAGGTGGTGAAACGAGCGGAAAATAATGATTCGTGCGTGC
TGTTGATCGATGATGGGCGGCATAAAGTGTTGCTCACAGGCGACGCGGAAAGCCAAATTGAACCACAGTTTATTTACAAG
GCAGGGAAAATTGACGTGTTACAGGTCGGACATCACGGCAGCAAAACCTCTACCAGCGAGGCATTGGTGAAAACCTTGCA
ACCTAGCATTGCGTTGATTTCTAGTGGACGGGGAAACCCTTGGCATTTCCCGCATTACGCGGTGTTAGCACGTTTGCAAA
CACAGCAAAGTGCGGTGTTAAATACGGCAGATTTTGGACAAATTCGCCTTTCTTTTTCAGCCAATAAGCCACCGCCTGAA
AATATCAGCATTGACACTGCACGGGGAACGTTTTCCCCTTGGTATCGGGAATTATTGTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-495)

Domain of unknown function (DUF4131) (DUF4131)

(33-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(572-754)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

52.81

93.407

0.493

Multiple sequence alignment