Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   ACIVJH_RS05515 Genome accession   NZ_CP173226
Coordinates   1030747..1031688 (+) Length   313 a.a.
NCBI ID   WP_113852102.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025747..1036688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS05490 - 1026242..1026751 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  ACIVJH_RS05495 - 1026983..1027564 (-) 582 Protein_1059 superoxide dismutase -
  ACIVJH_RS05500 dnaB 1027728..1029134 (+) 1407 WP_113852099.1 replicative DNA helicase -
  ACIVJH_RS05505 pilH 1029442..1030104 (+) 663 WP_113852100.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACIVJH_RS05510 pilI 1030136..1030750 (+) 615 WP_113852101.1 type IV pilus modification protein PilV Machinery gene
  ACIVJH_RS05515 pilJ 1030747..1031688 (+) 942 WP_113852102.1 PilW family protein Machinery gene
  ACIVJH_RS05520 pilK 1031667..1032266 (+) 600 WP_113852103.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACIVJH_RS05525 pilL 1032268..1032741 (+) 474 WP_211305724.1 PilX family type IV pilin Machinery gene
  ACIVJH_RS05530 - 1032811..1033119 (-) 309 WP_113852105.1 AzlD family protein -
  ACIVJH_RS05535 - 1033116..1033824 (-) 709 Protein_1067 AzlC family ABC transporter permease -
  ACIVJH_RS05540 dut 1033990..1034442 (+) 453 WP_113852107.1 dUTP diphosphatase -
  ACIVJH_RS05545 dapC 1034520..1035707 (+) 1188 WP_113852108.1 succinyldiaminopimelate transaminase -
  ACIVJH_RS05550 yaaA 1035863..1036642 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34299.06 Da        Isoelectric Point: 9.3783

>NTDB_id=1070868 ACIVJH_RS05515 WP_113852102.1 1030747..1031688(+) (pilJ) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHIGNDVFSNVAQKNALFSLKRNSTNSTNKLIPITESPNINYRNFFQVSSALIFQYGIDDVNASAATTVVSSCAA
ISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGKIAGEGGLFRFQLDDKGEWGNPQLLVKKVKRMKVRY
IYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGNDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1070868 ACIVJH_RS05515 WP_113852102.1 1030747..1031688(+) (pilJ) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGGAAATGATGTTTTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTCCTTAAAAAG
GAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCGGAATTTTTTCCAGGTTA
GTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGCTGTGCCGCA
ATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGAGCA
AAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAAGATTGCCGGTGAGGGAGGTTTGTTCC
GCTTCCAATTGGATGATAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAAACGTATGAAAGTGCGGTAT
ATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCTC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAATGATGCCAAGATTGCCGCTTCTTCAGATAATATTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

95.527

100

0.955

Multiple sequence alignment