Detailed information NTG1070728

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACIVH0_RS04475
• Genome accession: NZ_CP173223
• Coordinates: 926050..927249 (-)
• Length: 399 a.a.
• NCBI ID: WP_041937118.1
• Uniprot ID: -
• Organism: Bordetella parapertussis strain NCTC 5952 [522]
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 921050..932249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIVH0_RS04455	phnC	921691..922461 (+)	771	WP_010927715.1	phosphonate ABC transporter ATP-binding protein	-
ACIVH0_RS04460	phnE	922479..923348 (+)	870	WP_169507383.1	phosphonate ABC transporter, permease protein PhnE	-
ACIVH0_RS04465	phnE	923345..924166 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
ACIVH0_RS04470	-	924405..926003 (+)	1599	WP_010927713.1	CYTH and CHAD domain-containing protein	-
ACIVH0_RS04475	pilA	926050..927249 (-)	1200	WP_041937118.1	signal recognition particle-docking protein FtsY	Machinery gene
ACIVH0_RS04480	rsmD	927325..927945 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACIVH0_RS04485	coaD	927966..928475 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
ACIVH0_RS04490	-	928530..928781 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ACIVH0_RS04495	-	928778..929995 (+)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
ACIVH0_RS04500	-	930003..930389 (-)	387	WP_010927711.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41695.66 Da
• Isoelectric Point: 5.2904

>NTDB_id=1070728 ACIVH0_RS04475 WP_041937118.1 926050..927249(-) (pilA) [Bordetella parapertussis strain NCTC 5952 [522]]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAESQPP
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLWPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=1070728 ACIVH0_RS04475 WP_041937118.1 926050..927249(-) (pilA) [Bordetella parapertussis strain NCTC 5952 [522]]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGTCGCAGCCACCG
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGTGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (195-397)

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516