Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACIU0M_RS04620 Genome accession   NZ_CP173187
Coordinates   964355..964717 (+) Length   120 a.a.
NCBI ID   WP_414733480.1    Uniprot ID   -
Organism   Acetobacterium carbinolicum strain DSM 16427     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 959355..969717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU0M_RS04575 (ACIU0M_04575) - 959497..960519 (+) 1023 WP_414733472.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACIU0M_RS04580 (ACIU0M_04580) - 960729..960860 (+) 132 WP_414733473.1 hypothetical protein -
  ACIU0M_RS04585 (ACIU0M_04585) - 960968..961234 (+) 267 WP_414733474.1 DUF4160 domain-containing protein -
  ACIU0M_RS04590 (ACIU0M_04590) - 961243..961482 (+) 240 WP_414733475.1 DUF2442 domain-containing protein -
  ACIU0M_RS04595 (ACIU0M_04595) - 961549..962325 (+) 777 WP_414733994.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACIU0M_RS04600 (ACIU0M_04600) - 962594..962869 (+) 276 WP_414733476.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  ACIU0M_RS04605 (ACIU0M_04605) - 962866..963150 (+) 285 WP_414733477.1 PIN domain-containing protein -
  ACIU0M_RS04610 (ACIU0M_04610) - 963596..963841 (-) 246 WP_414733478.1 transposase -
  ACIU0M_RS04615 (ACIU0M_04615) - 964000..964362 (+) 363 WP_414733479.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIU0M_RS04620 (ACIU0M_04620) HI0659 964355..964717 (+) 363 WP_414733480.1 helix-turn-helix domain-containing protein Machinery gene
  ACIU0M_RS04625 (ACIU0M_04625) - 965244..966092 (+) 849 WP_414733481.1 transposase -
  ACIU0M_RS04630 (ACIU0M_04630) - 966112..967650 (+) 1539 WP_414151297.1 YifB family Mg chelatase-like AAA ATPase -
  ACIU0M_RS04635 (ACIU0M_04635) - 967659..967865 (+) 207 WP_414733482.1 helix-hairpin-helix domain-containing protein -
  ACIU0M_RS04640 (ACIU0M_04640) dprA 967877..968779 (+) 903 WP_414733483.1 DNA-processing protein DprA -
  ACIU0M_RS04645 (ACIU0M_04645) - 968948..969628 (+) 681 WP_414733484.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13746.08 Da        Isoelectric Point: 10.7734

>NTDB_id=1070555 ACIU0M_RS04620 WP_414733480.1 964355..964717(+) (HI0659) [Acetobacterium carbinolicum strain DSM 16427]
MSKTKVSPIGSSWDEFEKRTFTPEEIMESDLRVALISELIRARNDQGITQKQLEEASGVKQPVIARMEKGTTDPQLMTIL
KILRPLGKTLAIVPIEEKQPRNIHLRTFKKGSTFRQKPMR

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1070555 ACIU0M_RS04620 WP_414733480.1 964355..964717(+) (HI0659) [Acetobacterium carbinolicum strain DSM 16427]
ATGAGTAAGACAAAAGTAAGTCCCATTGGATCAAGCTGGGATGAGTTTGAGAAAAGAACATTCACCCCGGAAGAAATAAT
GGAATCTGATTTGAGAGTAGCATTAATAAGCGAACTAATCCGTGCTAGAAATGATCAGGGAATCACCCAAAAGCAGTTGG
AAGAAGCAAGTGGTGTTAAGCAACCCGTCATTGCCCGAATGGAAAAAGGTACAACTGATCCCCAATTGATGACTATTTTA
AAAATACTAAGACCACTTGGCAAGACCTTGGCCATTGTGCCAATTGAAGAAAAACAACCCCGAAACATTCATTTGAGAAC
ATTTAAAAAAGGCAGCACATTCAGGCAAAAGCCCATGAGATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.263

79.167

0.517

Multiple sequence alignment