Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACIU0M_RS04565 Genome accession   NZ_CP173187
Coordinates   958476..958838 (+) Length   120 a.a.
NCBI ID   WP_414151287.1    Uniprot ID   -
Organism   Acetobacterium carbinolicum strain DSM 16427     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 953476..963838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU0M_RS04555 (ACIU0M_04555) - 954586..957354 (+) 2769 WP_414733470.1 hypothetical protein -
  ACIU0M_RS04560 (ACIU0M_04560) - 958120..958473 (+) 354 WP_322519274.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACIU0M_RS04565 (ACIU0M_04565) HI0659 958476..958838 (+) 363 WP_414151287.1 helix-turn-helix domain-containing protein Machinery gene
  ACIU0M_RS04570 (ACIU0M_04570) - 959223..959456 (+) 234 WP_414733471.1 hypothetical protein -
  ACIU0M_RS04575 (ACIU0M_04575) - 959497..960519 (+) 1023 WP_414733472.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACIU0M_RS04580 (ACIU0M_04580) - 960729..960860 (+) 132 WP_414733473.1 hypothetical protein -
  ACIU0M_RS04585 (ACIU0M_04585) - 960968..961234 (+) 267 WP_414733474.1 DUF4160 domain-containing protein -
  ACIU0M_RS04590 (ACIU0M_04590) - 961243..961482 (+) 240 WP_414733475.1 DUF2442 domain-containing protein -
  ACIU0M_RS04595 (ACIU0M_04595) - 961549..962325 (+) 777 WP_414733994.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACIU0M_RS04600 (ACIU0M_04600) - 962594..962869 (+) 276 WP_414733476.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  ACIU0M_RS04605 (ACIU0M_04605) - 962866..963150 (+) 285 WP_414733477.1 PIN domain-containing protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13727.11 Da        Isoelectric Point: 10.6841

>NTDB_id=1070554 ACIU0M_RS04565 WP_414151287.1 958476..958838(+) (HI0659) [Acetobacterium carbinolicum strain DSM 16427]
MSNKKISPMGESWEDYRKRTFTPEEIMESDLRVALISELIRARNDQGITQKQLEEASGVKQPVIARMEKGTTDPQLMTIL
KILRPLGKTLAIVPIEEKSPRNIRFKTFKKGSAFKQKPLV

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1070554 ACIU0M_RS04565 WP_414151287.1 958476..958838(+) (HI0659) [Acetobacterium carbinolicum strain DSM 16427]
ATGAGCAACAAAAAAATAAGCCCAATGGGTGAAAGTTGGGAAGACTATCGAAAAAGAACATTCACCCCGGAAGAAATAAT
GGAATCTGATTTGAGAGTAGCATTAATAAGCGAATTAATTCGTGCCAGAAATGATCAGGGAATCACACAAAAGCAATTGG
AAGAAGCAAGTGGCGTTAAACAACCAGTCATTGCCCGAATGGAAAAAGGAACTACTGATCCTCAGTTAATGACTATCTTG
AAAATACTAAGACCACTTGGAAAAACCCTGGCCATTGTGCCAATTGAAGAAAAATCCCCCCGGAATATTCGTTTTAAAAC
ATTTAAAAAAGGTAGTGCATTTAAACAAAAACCTTTAGTTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.105

79.167

0.492

Multiple sequence alignment