Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   B6116_RS04760 Genome accession   NZ_CP007667
Coordinates   935917..938106 (+) Length   729 a.a.
NCBI ID   WP_002259609.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930917..943106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS04745 (B6116_00887) - 931500..932678 (+) 1179 WP_002225577.1 MacA family efflux pump subunit -
  B6116_RS04750 (B6116_00888) - 932744..934678 (+) 1935 WP_047957324.1 MacB family efflux pump subunit -
  B6116_RS04755 (B6116_00889) - 934996..935778 (-) 783 WP_002214390.1 DsbC family protein -
  B6116_RS04760 (B6116_00890) priA 935917..938106 (+) 2190 WP_002259609.1 primosomal protein N' Machinery gene
  B6116_RS04765 (B6116_00891) - 938152..939225 (-) 1074 WP_002259610.1 NnrS family protein -
  B6116_RS04770 (B6116_00892) - 939273..940229 (-) 957 WP_047957325.1 IS110 family transposase -

Sequence

Protein


Download         Length: 729 a.a.        Molecular weight: 80944.67 Da        Isoelectric Point: 7.5464

>NTDB_id=107040 B6116_RS04760 WP_002259609.1 935917..938106(+) (priA) [Neisseria meningitidis strain B6116/77]
MIYHRIAVNVPLSDGLLTYSHSDPLPPGTRVLVPFRNKTVVGMVWETDIAPDMDTARILGVQTTFSDEPLLPESWRDLLA
FTSRYYHYPTGQAVFAALPQGLKETRAVEMPQPPLFYALNEAGRAQTPPPARFNKKAALWDALLSGEMTMAALKQVNAQA
AKLIEDWAEQGWIETTEAAKPVLRSCNGQASHSEFVLNADQQKASDAIQTALGRFQPFLLYGITGSGKTEVYFDAMAKVL
AQGRQVLFLLPEINLTPQLLKRVGNRFADVPTAVLHSQMAAGRRTQDYLRAMLGQAKLVIGTRLAVFTPMDDVGLIVVDE
EHDGSFKQDNELRYHARDLAVWRAKQGGCPIILGSATPSLESWHKAQSGAYRLLQLTERAHTAAQLPQVDILNVGRLKLD
NGFSPQALQLLKQNFEAGGMSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRARQLRCHHCDHREPIPYKCPDCG
NQDLTAVGHGTQRVEETLRTFLPKAAVVRVDRDSTAHKNDWADLYRRIADNKIDILVGTQMLAKGHDFARLNLVIVLNAD
GSLYSADFRAPERLFAELMQVSGRAGRADKPGKVLIQTQLPEHPVFAAVKAQDYAVFAENELNERQMFAMPPFGFQTAVR
ADAPRVADAMEFLNAAKETLAPLLPESVSQFGAAPMLMVRLAERERAQIFLESTSRQDLHRAVSLWVQVLQQNRDGKIRW
SVDVDPQEA

Nucleotide


Download         Length: 2190 bp        

>NTDB_id=107040 B6116_RS04760 WP_002259609.1 935917..938106(+) (priA) [Neisseria meningitidis strain B6116/77]
ATGATCTACCACCGCATCGCCGTAAACGTGCCGCTTTCAGACGGCCTTTTGACTTATTCCCATTCCGATCCGCTTCCTCC
GGGAACGCGGGTGCTTGTGCCTTTCCGCAATAAAACCGTGGTCGGGATGGTGTGGGAAACGGATATTGCGCCGGATATGG
ATACGGCGCGGATTTTGGGCGTTCAGACGACCTTTTCGGACGAACCGCTGCTGCCCGAAAGCTGGCGTGATTTGTTGGCG
TTTACGTCGCGTTATTACCACTATCCGACCGGGCAGGCAGTATTTGCCGCATTGCCGCAAGGTTTGAAGGAAACGCGCGC
GGTGGAAATGCCGCAGCCGCCCTTGTTTTACGCGTTGAACGAAGCGGGCAGGGCGCAAACGCCGCCGCCGGCGCGGTTCA
ACAAAAAAGCGGCTTTGTGGGACGCGCTGCTGTCGGGCGAAATGACGATGGCAGCGTTGAAGCAGGTAAACGCGCAGGCG
GCGAAATTAATCGAAGATTGGGCGGAGCAGGGTTGGATTGAAACGACGGAAGCGGCGAAGCCCGTTTTAAGGTCGTGTAA
TGGGCAGGCTTCGCACTCTGAATTTGTATTAAATGCTGACCAGCAGAAGGCTTCCGATGCCATTCAGACGGCATTGGGAC
GCTTCCAGCCGTTTCTGCTGTACGGCATCACCGGCAGCGGCAAGACCGAAGTGTATTTCGATGCGATGGCGAAAGTGTTG
GCTCAGGGGCGGCAGGTGTTGTTTCTGTTGCCCGAAATCAACCTCACGCCGCAGCTTTTGAAGCGGGTGGGAAATCGTTT
TGCCGACGTGCCGACCGCCGTGTTGCACAGTCAGATGGCGGCAGGCAGGCGCACGCAGGATTATTTGCGCGCGATGTTGG
GGCAGGCGAAATTGGTCATCGGCACGCGGCTGGCGGTGTTTACGCCGATGGATGATGTCGGGCTGATTGTAGTCGATGAG
GAACACGACGGCTCGTTCAAACAAGACAACGAATTGCGCTACCACGCCCGCGATTTGGCGGTGTGGCGGGCGAAGCAGGG
CGGCTGCCCCATCATATTGGGCAGTGCCACGCCCAGCTTGGAAAGCTGGCACAAGGCGCAAAGCGGCGCGTACCGCCTGC
TGCAACTGACCGAACGCGCCCATACCGCCGCGCAACTGCCGCAAGTGGACATTCTCAACGTAGGCCGTCTGAAACTCGAC
AACGGTTTCTCGCCGCAAGCCTTGCAGCTTTTGAAACAGAATTTTGAAGCGGGCGGTATGTCGCTGGTGTACCTCAACCG
GCGCGGCTTCGCACCCGCGCTGTTTTGCGGCGACTGCGGCCATACCTTCGGCTGCCCAAACTGCTCCGCCAAAATGGTAC
TGCACCAACGCGCCCGCCAACTGCGCTGTCACCACTGCGACCACCGCGAACCCATCCCGTACAAATGCCCCGACTGCGGC
AACCAAGACCTGACCGCCGTCGGCCACGGCACGCAGCGCGTCGAAGAAACCCTGCGCACCTTCCTGCCCAAGGCAGCCGT
CGTCCGTGTTGACAGGGACAGCACCGCGCACAAAAATGACTGGGCGGATTTGTACCGCCGCATCGCCGACAACAAAATCG
ACATTTTGGTCGGCACGCAGATGCTTGCCAAAGGCCATGATTTCGCGCGGCTCAACCTCGTTATCGTATTGAACGCCGAC
GGCAGCCTGTACAGCGCGGACTTTCGCGCGCCGGAAAGGCTGTTTGCCGAGCTGATGCAAGTGTCAGGCAGGGCGGGGCG
CGCCGACAAACCCGGCAAGGTGTTGATACAGACCCAACTGCCCGAACATCCTGTCTTCGCCGCCGTCAAAGCGCAAGACT
ATGCCGTGTTTGCCGAAAACGAATTGAACGAGCGGCAAATGTTCGCCATGCCGCCCTTCGGTTTCCAGACCGCCGTCCGC
GCCGATGCGCCGCGCGTTGCCGATGCGATGGAATTTCTCAATGCCGCCAAAGAAACCCTCGCCCCGCTGTTGCCCGAAAG
CGTTTCCCAGTTCGGCGCGGCCCCGATGCTGATGGTGCGCCTCGCCGAACGCGAACGCGCGCAAATCTTCCTCGAATCGA
CATCCCGACAGGATTTGCACCGTGCCGTGAGTTTGTGGGTGCAGGTGTTGCAGCAAAACCGCGACGGCAAAATCAGATGG
TCGGTGGATGTCGATCCGCAGGAGGCTTGA

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(5-99)

Primosomal protein N C-terminal domain (PriA_C)

(632-726)

DEAD/DEAH box helicase (DEAD)

(207-361)

Helicase conserved C-terminal domain (Helicase_C)

(515-588)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(445-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

35.753

100

0.365