Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH59B_RS21485 Genome accession   NZ_CP173059
Coordinates   4852053..4853006 (-) Length   317 a.a.
NCBI ID   WP_019688644.1    Uniprot ID   A0A378Y424
Organism   MAG: Paenibacillus sp. DP01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4847053..4858006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH59B_RS21460 - 4847521..4848432 (-) 912 WP_031462257.1 aldo/keto reductase -
  ACH59B_RS21465 - 4848591..4849334 (-) 744 WP_153794462.1 alpha/beta hydrolase -
  ACH59B_RS21470 - 4849368..4850348 (-) 981 WP_102997615.1 siderophore ABC transporter substrate-binding protein -
  ACH59B_RS21475 - 4850361..4851119 (-) 759 WP_153794463.1 ABC transporter ATP-binding protein -
  ACH59B_RS21480 - 4851113..4852063 (-) 951 WP_126666631.1 iron chelate uptake ABC transporter family permease subunit -
  ACH59B_RS21485 ceuB 4852053..4853006 (-) 954 WP_019688644.1 ABC transporter permease Machinery gene
  ACH59B_RS21490 - 4853331..4854008 (+) 678 WP_153794466.1 response regulator transcription factor -
  ACH59B_RS21495 - 4854009..4854926 (+) 918 WP_404302616.1 sensor histidine kinase -
  ACH59B_RS21500 - 4855034..4855711 (+) 678 WP_017425557.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34704.67 Da        Isoelectric Point: 9.9012

>NTDB_id=1070211 ACH59B_RS21485 WP_019688644.1 4852053..4853006(-) (ceuB) [MAG: Paenibacillus sp. DP01]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1070211 ACH59B_RS21485 WP_019688644.1 4852053..4853006(-) (ceuB) [MAG: Paenibacillus sp. DP01]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTACTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACTCGGAACCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTGGGCG
TACATTACAAGCGCACTGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTAATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGAAGCGCGTTGTTCTTGTACTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378Y424

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498

Multiple sequence alignment