Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   B6116_RS01230 Genome accession   NZ_CP007667
Coordinates   243420..244388 (+) Length   322 a.a.
NCBI ID   WP_002226764.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 238420..249388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS01220 (B6116_00225) fetA 239447..241585 (+) 2139 WP_047957311.1 TonB-dependent siderophore receptor FetA/FrpB -
  B6116_RS15340 - 242139..242201 (-) 63 Protein_221 transposase -
  B6116_RS01225 (B6116_00226) - 242285..243256 (+) 972 WP_002244702.1 siderophore ABC transporter substrate-binding protein -
  B6116_RS14480 - 243274..243423 (+) 150 WP_162488766.1 hypothetical protein -
  B6116_RS01230 (B6116_00227) ceuB 243420..244388 (+) 969 WP_002226764.1 ABC transporter permease Machinery gene
  B6116_RS01235 (B6116_00228) - 244378..245352 (+) 975 WP_002226765.1 iron chelate uptake ABC transporter family permease subunit -
  B6116_RS01240 (B6116_00229) - 245397..246023 (+) 627 WP_002226766.1 FmdE family protein -
  B6116_RS01245 (B6116_00230) - 246106..246864 (+) 759 WP_002226767.1 ABC transporter ATP-binding protein -
  B6116_RS01250 (B6116_00231) - 247168..248385 (+) 1218 WP_002246495.1 YadA-like family protein -
  B6116_RS01255 (B6116_00232) - 248451..248789 (-) 339 WP_002214902.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34409.68 Da        Isoelectric Point: 10.0891

>NTDB_id=107019 B6116_RS01230 WP_002226764.1 243420..244388(+) (ceuB) [Neisseria meningitidis strain B6116/77]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=107019 B6116_RS01230 WP_002226764.1 243420..244388(+) (ceuB) [Neisseria meningitidis strain B6116/77]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCTCTGTCGGACAGCCAGCAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTAATCGGGATGCTGGTGTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTAGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388