Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACIGXT_RS11790 Genome accession   NZ_CP173038
Coordinates   2440911..2441711 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain Shannan.BV80-12     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2435911..2446711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIGXT_RS11760 (ACIGXT_11760) - 2436461..2437093 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  ACIGXT_RS11765 (ACIGXT_11765) - 2437384..2437521 (+) 138 WP_014470646.1 hypothetical protein -
  ACIGXT_RS11770 (ACIGXT_11770) - 2437615..2438733 (+) 1119 WP_117614767.1 NADH-dependent flavin oxidoreductase -
  ACIGXT_RS11775 (ACIGXT_11775) - 2438859..2439071 (+) 213 WP_003153183.1 spore germination protein -
  ACIGXT_RS11780 (ACIGXT_11780) - 2439197..2439409 (+) 213 WP_014305392.1 spore germination protein -
  ACIGXT_RS11785 (ACIGXT_11785) alr 2439584..2440765 (+) 1182 WP_044053454.1 alanine racemase -
  ACIGXT_RS11790 (ACIGXT_11790) spo0A 2440911..2441711 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  ACIGXT_RS11795 (ACIGXT_11795) spoIVB 2441992..2443272 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  ACIGXT_RS11800 (ACIGXT_11800) recN 2443436..2445166 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  ACIGXT_RS11805 (ACIGXT_11805) ahrC 2445198..2445647 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  ACIGXT_RS11810 (ACIGXT_11810) - 2445744..2446589 (-) 846 WP_044053455.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=1070116 ACIGXT_RS11790 WP_003153177.1 2440911..2441711(-) (spo0A) [Bacillus velezensis strain Shannan.BV80-12]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1070116 ACIGXT_RS11790 WP_003153177.1 2440911..2441711(-) (spo0A) [Bacillus velezensis strain Shannan.BV80-12]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment