Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACIFYW_RS15795 Genome accession   NZ_CP173027
Coordinates   582625..583719 (-) Length   364 a.a.
NCBI ID   WP_404273080.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 577625..588719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS15785 (ACIFYW_15785) - 579377..580042 (+) 666 WP_000268201.1 flagellar brake protein -
  ACIFYW_RS15790 (ACIFYW_15790) luxQ 580034..582607 (-) 2574 WP_404273079.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  ACIFYW_RS15795 (ACIFYW_15795) luxP 582625..583719 (-) 1095 WP_404273080.1 substrate-binding domain-containing protein Regulator
  ACIFYW_RS15800 (ACIFYW_15800) traF 583931..585091 (-) 1161 WP_404273081.1 conjugal transfer protein TraF -
  ACIFYW_RS15805 (ACIFYW_15805) - 585193..585498 (-) 306 WP_071170880.1 GIY-YIG nuclease family protein -
  ACIFYW_RS15810 (ACIFYW_15810) - 585515..586165 (-) 651 WP_001025631.1 YceH family protein -
  ACIFYW_RS15815 (ACIFYW_15815) - 586207..586404 (-) 198 WP_001246071.1 hypothetical protein -
  ACIFYW_RS15820 (ACIFYW_15820) - 586592..586912 (+) 321 WP_001089529.1 DUF496 family protein -
  ACIFYW_RS15825 (ACIFYW_15825) - 587325..587576 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41236.86 Da        Isoelectric Point: 6.7050

>NTDB_id=1070062 ACIFYW_RS15795 WP_404273080.1 582625..583719(-) (luxP) [Vibrio cholerae strain SPH 24-01]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSTLTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMKYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=1070062 ACIFYW_RS15795 WP_404273080.1 582625..583719(-) (luxP) [Vibrio cholerae strain SPH 24-01]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTACGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGAAGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTATGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.352

100

0.984

Multiple sequence alignment