Detailed information NTG1070049

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIFYW_RS10990
• Genome accession: NZ_CP173026
• Coordinates: 2457310..2458317 (-)
• Length: 335 a.a.
• NCBI ID: WP_404272598.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SPH 24-01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2452310..2463317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIFYW_RS10980 (ACIFYW_10980)	cysM	2453473..2454360 (+)	888	WP_404272596.1	cysteine synthase CysM	-
ACIFYW_RS10985 (ACIFYW_10985)	mutS	2454628..2457216 (+)	2589	WP_404272597.1	DNA mismatch repair protein MutS	-
ACIFYW_RS10990 (ACIFYW_10990)	rpoS	2457310..2458317 (-)	1008	WP_404272598.1	RNA polymerase sigma factor RpoS	Regulator
ACIFYW_RS10995 (ACIFYW_10995)	nlpD	2458391..2459326 (-)	936	WP_071187182.1	murein hydrolase activator NlpD	-
ACIFYW_RS11000 (ACIFYW_11000)	-	2459326..2459952 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACIFYW_RS11005 (ACIFYW_11005)	surE	2459945..2460697 (-)	753	WP_404272599.1	5'/3'-nucleotidase SurE	-
ACIFYW_RS11010 (ACIFYW_11010)	truD	2460699..2461784 (-)	1086	WP_000129764.1	tRNA pseudouridine(13) synthase TruD	-
ACIFYW_RS11015 (ACIFYW_11015)	ispF	2461814..2462290 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIFYW_RS11020 (ACIFYW_11020)	ispD	2462287..2462985 (-)	699	WP_001061957.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACIFYW_RS11025 (ACIFYW_11025)	ftsB	2462982..2463266 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38432.30 Da
• Isoelectric Point: 4.3841

>NTDB_id=1070049 ACIFYW_RS10990 WP_404272598.1 2457310..2458317(-) (rpoS) [Vibrio cholerae strain SPH 24-01]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREGFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1070049 ACIFYW_RS10990 WP_404272598.1 2457310..2458317(-) (rpoS) [Vibrio cholerae strain SPH 24-01]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGGGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994