Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACIFYW_RS10845 Genome accession   NZ_CP173026
Coordinates   2430330..2430848 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2425330..2435848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS10820 (ACIFYW_10820) rimM 2425439..2425993 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  ACIFYW_RS10825 (ACIFYW_10825) rpsP 2426021..2426269 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  ACIFYW_RS10830 (ACIFYW_10830) ffh 2426505..2427890 (-) 1386 WP_404272592.1 signal recognition particle protein -
  ACIFYW_RS10835 (ACIFYW_10835) - 2428103..2428897 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  ACIFYW_RS10840 (ACIFYW_10840) - 2428980..2430260 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ACIFYW_RS10845 (ACIFYW_10845) luxS 2430330..2430848 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  ACIFYW_RS10850 (ACIFYW_10850) gshA 2430897..2432471 (-) 1575 WP_404272593.1 glutamate--cysteine ligase -
  ACIFYW_RS10855 (ACIFYW_10855) - 2432583..2435438 (-) 2856 WP_404272594.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1070046 ACIFYW_RS10845 WP_001130227.1 2430330..2430848(-) (luxS) [Vibrio cholerae strain SPH 24-01]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1070046 ACIFYW_RS10845 WP_001130227.1 2430330..2430848(-) (luxS) [Vibrio cholerae strain SPH 24-01]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTATTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCTCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment