Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACIFYW_RS05130 Genome accession   NZ_CP173026
Coordinates   1107615..1109039 (-) Length   474 a.a.
NCBI ID   WP_019829728.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1102615..1114039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS05105 (ACIFYW_05105) purT 1103124..1104299 (-) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -
  ACIFYW_RS05110 (ACIFYW_05110) - 1104453..1105328 (-) 876 WP_000462866.1 AEC family transporter -
  ACIFYW_RS05115 (ACIFYW_05115) cdd 1105487..1106374 (-) 888 WP_404272793.1 cytidine deaminase -
  ACIFYW_RS05120 (ACIFYW_05120) - 1106544..1107218 (-) 675 WP_000266239.1 LrgB family protein -
  ACIFYW_RS05125 (ACIFYW_05125) - 1107209..1107583 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  ACIFYW_RS05130 (ACIFYW_05130) sbcB 1107615..1109039 (-) 1425 WP_019829728.1 exodeoxyribonuclease I Machinery gene
  ACIFYW_RS05135 (ACIFYW_05135) - 1109183..1110556 (-) 1374 WP_000117953.1 L-cystine transporter -
  ACIFYW_RS05140 (ACIFYW_05140) msrB 1110902..1111348 (+) 447 WP_000935886.1 peptide-methionine (R)-S-oxide reductase MsrB -
  ACIFYW_RS05145 (ACIFYW_05145) cobT 1111959..1112984 (+) 1026 WP_404272794.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACIFYW_RS05150 (ACIFYW_05150) - 1112984..1113769 (+) 786 WP_404272795.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54512.91 Da        Isoelectric Point: 5.9820

>NTDB_id=1070034 ACIFYW_RS05130 WP_019829728.1 1107615..1109039(-) (sbcB) [Vibrio cholerae strain SPH 24-01]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1070034 ACIFYW_RS05130 WP_019829728.1 1107615..1109039(-) (sbcB) [Vibrio cholerae strain SPH 24-01]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCAAACG
ACTATTTACCTGCTCCTGAAGCCGCACTGATCACTGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTAGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTCCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.367

100

0.994

Multiple sequence alignment