Detailed information NTG1070021

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACIFYW_RS01105
• Genome accession: NZ_CP173026
• Coordinates: 238701..239708 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain SPH 24-01
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 233701..244708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIFYW_RS01085 (ACIFYW_01085)	metJ	233705..234022 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
ACIFYW_RS01090 (ACIFYW_01090)	-	234133..235410 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
ACIFYW_RS01095 (ACIFYW_01095)	rpmE	235718..235936 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
ACIFYW_RS01100 (ACIFYW_01100)	priA	236191..238395 (+)	2205	WP_114716698.1	primosomal protein N'	-
ACIFYW_RS01105 (ACIFYW_01105)	cytR	238701..239708 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
ACIFYW_RS01110 (ACIFYW_01110)	-	239880..240431 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
ACIFYW_RS01115 (ACIFYW_01115)	hslV	240568..241125 (+)	558	WP_001960141.1	ATP-dependent protease subunit HslV	-
ACIFYW_RS01120 (ACIFYW_01120)	hslU	241191..242522 (+)	1332	WP_019830204.1	HslU--HslV peptidase ATPase subunit	-
ACIFYW_RS01125 (ACIFYW_01125)	-	242626..243543 (+)	918	WP_001886087.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACIFYW_RS01130 (ACIFYW_01130)	rraA	243618..244133 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=1070021 ACIFYW_RS01105 WP_000224452.1 238701..239708(+) (cytR) [Vibrio cholerae strain SPH 24-01]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=1070021 ACIFYW_RS01105 WP_000224452.1 238701..239708(+) (cytR) [Vibrio cholerae strain SPH 24-01]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCTGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGCATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACGACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904