Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACIHQS_RS08715 Genome accession   NZ_CP173025
Coordinates   1824534..1825490 (-) Length   318 a.a.
NCBI ID   WP_404227216.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1819534..1830490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS08690 (ACIHQS_08690) - 1819861..1821069 (+) 1209 WP_061519702.1 MFS transporter -
  ACIHQS_RS08695 (ACIHQS_08695) - 1821157..1821774 (-) 618 WP_404227207.1 DUF2238 domain-containing protein -
  ACIHQS_RS08700 (ACIHQS_08700) - 1821870..1822823 (-) 954 WP_404227209.1 siderophore ABC transporter substrate-binding protein -
  ACIHQS_RS08705 (ACIHQS_08705) - 1822833..1823597 (-) 765 WP_404227212.1 ABC transporter ATP-binding protein -
  ACIHQS_RS08710 (ACIHQS_08710) - 1823588..1824544 (-) 957 WP_404227215.1 iron chelate uptake ABC transporter family permease subunit -
  ACIHQS_RS08715 (ACIHQS_08715) ceuB 1824534..1825490 (-) 957 WP_404227216.1 ABC transporter permease Machinery gene
  ACIHQS_RS08720 (ACIHQS_08720) - 1825760..1826743 (-) 984 WP_061396947.1 ion transporter -
  ACIHQS_RS08725 (ACIHQS_08725) - 1826968..1828425 (+) 1458 WP_404227219.1 DASS family sodium-coupled anion symporter -
  ACIHQS_RS08730 (ACIHQS_08730) - 1828483..1829208 (-) 726 WP_404227222.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34782.01 Da        Isoelectric Point: 9.8648

>NTDB_id=1069998 ACIHQS_RS08715 WP_404227216.1 1824534..1825490(-) (ceuB) [Acinetobacter venetianus strain AVYS1]
MIKRRYLILLLLPLAFISLFVGVGEMSLAGLWAGNPQEWQLFWTSRLPRLMAIIVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLVSIILLPSASIFIKTGFAIVVTLIGAMAFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQLDL
LQNLAGWLQGDFSTILNGQYELIYLSMPVLILIYIFANRFVLAGLGQDFATNLGLNYKQTLFIGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDNIRRTLSHTVLLGALLVLLCDVFGRVVIFPYEVSVSLIMGVVGSVIFLWLLLRRYRYAS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1069998 ACIHQS_RS08715 WP_404227216.1 1824534..1825490(-) (ceuB) [Acinetobacter venetianus strain AVYS1]
ATGATTAAGCGGCGTTACCTGATTTTATTATTACTTCCACTGGCATTTATTTCTTTATTTGTCGGTGTGGGTGAGATGAG
TCTTGCTGGTCTGTGGGCTGGCAATCCTCAAGAGTGGCAGTTGTTTTGGACCAGTCGTTTACCACGTTTGATGGCGATTA
TTGTGGCGGGTGCAGGTCTAAGTGTCTGTGGTTTGATTATGCAGTCACTGAGTCGCAACCGCTTTGTCTCTCCAACTACC
GCAGGTCTATATGACTGTGCACGTTTGGGTGTATTGGTTTCGATTATTTTACTGCCAAGTGCTTCAATCTTTATTAAAAC
TGGTTTTGCGATTGTCGTAACGCTCATTGGTGCGATGGCATTTATGAGTATTCTGGCGACTTTAAAGCATCGTGATACTG
TTTTTGTTCCACTGGTGGGGATGATTTTTGGTAGTATCATTTCTGCATTTACCACCTTCATTGCGCTGCAACTGGATTTA
TTACAGAACTTAGCAGGTTGGTTGCAAGGGGATTTTTCCACCATTTTAAATGGTCAATATGAGCTGATCTATCTCAGCAT
GCCTGTTCTGATTCTGATTTATATCTTTGCCAATCGTTTTGTTTTGGCTGGGTTAGGGCAGGATTTTGCGACGAATCTTG
GACTGAATTATAAGCAGACCCTTTTTATTGGCCTACTACTGGTTTCGGTCATTACGGGTGTGGTGATTGTCACTGTGGGC
GCGATTCCATTTCTTGGATTGATTGTACCGAATCTGGTGAGTCTGTATCTGGGTGACAATATCCGTAGAACGCTTTCGCA
TACTGTATTGTTGGGTGCTTTGCTGGTTCTACTCTGTGATGTATTTGGCAGAGTGGTAATTTTCCCTTATGAAGTCTCTG
TGAGCCTGATTATGGGTGTGGTGGGAAGCGTGATTTTCCTGTGGTTGCTACTCAGGAGATATCGTTATGCCTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.84

98.428

0.491

Multiple sequence alignment