Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   ACIHQS_RS00800 Genome accession   NZ_CP173025
Coordinates   165445..165771 (+) Length   108 a.a.
NCBI ID   WP_004876396.1    Uniprot ID   G7GBM7
Organism   Acinetobacter venetianus strain AVYS1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 160445..170771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS00775 (ACIHQS_00775) hemC 160891..161808 (+) 918 WP_404229745.1 hydroxymethylbilane synthase -
  ACIHQS_RS00780 (ACIHQS_00780) - 161808..162584 (+) 777 WP_404229748.1 uroporphyrinogen-III synthase -
  ACIHQS_RS00785 (ACIHQS_00785) - 162581..163411 (+) 831 WP_404229751.1 hypothetical protein -
  ACIHQS_RS00790 (ACIHQS_00790) - 163418..164611 (+) 1194 WP_404229754.1 heme biosynthesis protein HemY -
  ACIHQS_RS00795 (ACIHQS_00795) - 164620..165057 (+) 438 WP_004876395.1 thioesterase family protein -
  ACIHQS_RS00800 (ACIHQS_00800) hns 165445..165771 (+) 327 WP_004876396.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACIHQS_RS00805 (ACIHQS_00805) gspN 165950..166693 (+) 744 WP_007480176.1 type II secretion system protein N -
  ACIHQS_RS00810 (ACIHQS_00810) - 166693..167541 (+) 849 WP_404229758.1 type II secretion system protein N -
  ACIHQS_RS00815 (ACIHQS_00815) gspD 167583..169847 (+) 2265 WP_404229762.1 type II secretion system secretin GspD -
  ACIHQS_RS00820 (ACIHQS_00820) - 169911..170528 (+) 618 WP_019385847.1 FHA domain-containing protein -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12357.07 Da        Isoelectric Point: 5.3565

>NTDB_id=1069984 ACIHQS_RS00800 WP_004876396.1 165445..165771(+) (hns) [Acinetobacter venetianus strain AVYS1]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAEKVGFSVEELLEVGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1069984 ACIHQS_RS00800 WP_004876396.1 165445..165771(+) (hns) [Acinetobacter venetianus strain AVYS1]
ATGAAACCAGATATTAGTGATTTGTCTGTTGAAGATCTAAAGCGTTTACAAGCAGAAGCAGAAGCTTTAATTGCGAGTAA
AAAAGATCAGGCAATCGAAGATGCTTATAATCAAATTATCGCGATTGCTGAAAAAGTTGGCTTTAGCGTAGAAGAGTTAT
TGGAAGTAGGCGAGCAAAAGCGTAAAAAAACAACACGTAAAGCTGTAGAGCCACGTTATCGCAATAAAAATAATACTGAA
GAAACTTGGACTGGTCGTGGTAAGCAACCACGCTGGTTAGTTGCAGAATTAGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(13-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB G7GBM7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

89.815

100

0.898


Multiple sequence alignment