Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACIHQS_RS00295 Genome accession   NZ_CP173025
Coordinates   53069..54220 (-) Length   383 a.a.
NCBI ID   WP_004881966.1    Uniprot ID   G7G9F0
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48069..59220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS00275 (ACIHQS_00275) - 49253..49897 (+) 645 WP_004881974.1 TetR/AcrR family transcriptional regulator -
  ACIHQS_RS00280 (ACIHQS_00280) - 50003..50923 (+) 921 WP_404231766.1 DMT family transporter -
  ACIHQS_RS00285 (ACIHQS_00285) - 51316..51885 (-) 570 WP_404229595.1 L-threonylcarbamoyladenylate synthase -
  ACIHQS_RS00290 (ACIHQS_00290) dprA 51922..53058 (-) 1137 WP_034604352.1 DNA-processing protein DprA Machinery gene
  ACIHQS_RS00295 (ACIHQS_00295) tsaP 53069..54220 (-) 1152 WP_004881966.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACIHQS_RS00300 (ACIHQS_00300) def 54341..54871 (+) 531 WP_019385262.1 peptide deformylase -
  ACIHQS_RS00305 (ACIHQS_00305) - 54893..55330 (+) 438 WP_192413475.1 DUF2946 family protein -
  ACIHQS_RS00310 (ACIHQS_00310) - 55404..57494 (+) 2091 WP_404229600.1 TonB-dependent copper receptor -
  ACIHQS_RS00315 (ACIHQS_00315) - 57542..58303 (-) 762 WP_404229603.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41722.72 Da        Isoelectric Point: 9.2749

>NTDB_id=1069979 ACIHQS_RS00295 WP_004881966.1 53069..54220(-) (tsaP) [Acinetobacter venetianus strain AVYS1]
MKKVLNGIQSFHALGLKKQLIAVAICAGLGMSVNLAHAASPNVSPPSVKAGAPNVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDKLLLCSLNGKPLIGKDEGDGCDGIIRRYSGNTSNLRPQVRIEALNNSVPVIPLAHIQQWLER
TSVLPAEAIANTPYILGTADNRVLAGKGQSVYVRGQGLENGQRYGVFREGQPYIVLDQNGKKQNLGVELTQVASGVAITS
ENDITTVELTDSYNGEVRRGDRVMLEQDAMLPTLFYPTDANQVRDGGKVIRVMGSIGTAAKNGVVTVDRGTADGVEIGQV
FSTYQEGETVRDPKTKEKVKLPGQYVGSVMIFKSFDRISYAYVLESELPIKVGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1069979 ACIHQS_RS00295 WP_004881966.1 53069..54220(-) (tsaP) [Acinetobacter venetianus strain AVYS1]
ATGAAAAAGGTTTTAAACGGCATACAATCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCGGTTGCGATTTGTGC
GGGATTAGGTATGAGTGTAAATCTGGCTCATGCAGCAAGTCCAAATGTCAGCCCCCCTTCTGTTAAAGCGGGTGCACCAA
ACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATTTCTGGAAAATTCTTAAGCAAGCCATGGCGTTGGCCTGAA
ATCTGGGCGAGCAATAAACATGTGAAAAATCCTCACTGGATTTATCCAGGTGACAAATTGCTTCTTTGTAGCCTGAACGG
TAAACCTTTAATTGGTAAAGATGAAGGCGATGGCTGTGATGGTATCATCCGTCGTTATTCTGGGAATACATCTAACTTAC
GCCCACAGGTACGTATTGAAGCGTTAAATAATAGTGTTCCTGTTATTCCACTGGCGCATATTCAACAATGGTTAGAACGG
ACATCGGTACTTCCTGCTGAGGCAATTGCAAATACGCCTTATATTCTGGGTACAGCAGATAACCGTGTCTTGGCTGGTAA
AGGTCAAAGCGTCTATGTTCGTGGTCAAGGTCTCGAAAATGGTCAGCGTTATGGCGTATTCCGTGAAGGTCAACCTTATA
TCGTGTTAGACCAAAATGGTAAAAAGCAAAACTTAGGTGTTGAACTCACACAAGTGGCATCTGGCGTTGCAATTACCAGT
GAAAATGACATTACTACGGTTGAACTCACGGATAGTTATAACGGCGAAGTTCGTCGTGGTGACCGCGTGATGCTTGAACA
AGACGCGATGTTACCCACATTATTCTACCCGACTGATGCAAACCAAGTCCGTGACGGCGGTAAAGTCATCCGTGTGATGG
GATCAATAGGTACTGCTGCGAAAAATGGTGTTGTTACGGTAGATCGTGGTACAGCTGATGGTGTTGAAATCGGTCAAGTG
TTCAGCACATACCAAGAGGGTGAAACGGTACGTGATCCAAAAACCAAAGAGAAAGTAAAATTACCAGGTCAATATGTGGG
TAGTGTTATGATCTTTAAGAGTTTTGATCGTATTAGCTATGCCTACGTATTGGAAAGTGAACTCCCAATCAAAGTGGGTT
CAGACATCAAACCACCTCGTCTTGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7G9F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.833

100

0.71

Multiple sequence alignment