Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACG2K1_RS05905 Genome accession   NZ_CP173024
Coordinates   1175891..1179100 (-) Length   1069 a.a.
NCBI ID   WP_395428489.1    Uniprot ID   -
Organism   Neisseria sp. 23W00296     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1170891..1184100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2K1_RS05885 (ACG2K1_05885) hprK 1171307..1172269 (+) 963 WP_036495449.1 HPr(Ser) kinase/phosphatase -
  ACG2K1_RS05890 (ACG2K1_05890) rapZ 1172250..1173095 (+) 846 WP_009425062.1 RNase adapter RapZ -
  ACG2K1_RS05895 (ACG2K1_05895) ylqF 1173213..1174145 (+) 933 WP_395428487.1 ribosome biogenesis GTPase YlqF -
  ACG2K1_RS05900 (ACG2K1_05900) - 1174413..1175732 (-) 1320 WP_395428488.1 murein hydrolase activator EnvC family protein -
  ACG2K1_RS05905 (ACG2K1_05905) recC 1175891..1179100 (-) 3210 WP_395428489.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACG2K1_RS05910 (ACG2K1_05910) - 1179317..1179619 (+) 303 WP_009425056.1 TM2 domain-containing protein -
  ACG2K1_RS05915 (ACG2K1_05915) - 1179696..1180370 (+) 675 WP_395428490.1 cytochrome b/b6 domain-containing protein -
  ACG2K1_RS05920 (ACG2K1_05920) - 1180627..1181718 (-) 1092 WP_395428491.1 hypothetical protein -
  ACG2K1_RS05925 (ACG2K1_05925) - 1181886..1183625 (+) 1740 WP_395428492.1 potassium/proton antiporter -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 117752.62 Da        Isoelectric Point: 5.1920

>NTDB_id=1069958 ACG2K1_RS05905 WP_395428489.1 1175891..1179100(-) (recC) [Neisseria sp. 23W00296]
MLNLYQSNRLEDLAAMMHKVQQSRPLPQAFAAEEVMVQSQGMRRFVARYLAKQDGIAANIRFSLPAGFAWRLMRDLLPGI
PELSPFDTEVMRWRLLGLFVSDGLNAPELASAKQVLSGYLAGGETAAYRLAGQIADIFDQYLVYRPDWIDAWQRGKPIGL
GGDEAWQAELWRFLDDGRQSAPHRVEMRRRLSAALAAPPAGVLPDRLCVFGIATLAPMYLQLLQELAQHCEVHIFALNPS
AEYWGNIIEPAQMLQQNDADPAAAGHPLLASLGKQGRDFFNALADSELAADLSVYRDEALSDGLLHRLQYGLQTLALPDG
SARTDDSIRIVAAHSPLRELQILKEHLLALLAGHPDLQPHDIAVLTPDIEPYAPFLEAVFGRESPQPLPYSVSDVKLGRR
RPLLSALEQLADIFDSRFEADKIFALLENETVLARFGLTLEDLPLLRDTAERLNIRWGADEAMRGGGSALFTWQQGLDRI
ALGWMLPDNGSLWQGVSPWHADPGHTAVYARFAAFIGRLKHWHAIWQRPADIAGWAERIRSLAEDICEPSEADRAAAQQL
AQALARWQQEAALAGFIGELSGSIASLHLSNFLGSRSDAGFLRGGITFCGMVPMRSLPFKVLCLIGLDDGKFPRDTRAAA
FDLIARHPRKGDRARRDDDRYLFLEALISAREHLYLSYVGRDIRTNEALAPSALVGELADCLADMTGQSVEELNAALVEN
HPLQAFSTRYFDGGRLSSTRADYAAALSAPPAKPAPFCGTESENADGGAGISTEVGHAAFLDFWRNPVKHWLSHTLDWQA
PYLGGAWETAEPFEPPCPRDTAAAYLDARLNRRDFADTAQVLEARSLLPAGEIGTLWRERCETAAKSLDSDLIASPPLPA
APYTFVSDGLTLYGSLDSLHRDGRIRFLDHAPNAPEKTVLLLEHLIYNAVRPDSAADLRSHWVQPDQITTLPPIPQQQAR
TLLAAWLAWWRTGQSRPLPFFAKTTLAAAEALLPDGKKTEEERRLSAYKAAATAYFGGKKSTGQCDYAEVAQVFGRNDTP
PVDGETFWLLAENLAAPLLAALSDTKEAV

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=1069958 ACG2K1_RS05905 WP_395428489.1 1175891..1179100(-) (recC) [Neisseria sp. 23W00296]
ATGCTTAACCTCTACCAGTCCAACCGCCTCGAAGATTTGGCCGCCATGATGCACAAAGTGCAGCAGAGCCGCCCGCTGCC
GCAGGCGTTTGCGGCGGAGGAAGTGATGGTGCAGAGCCAGGGCATGCGCCGCTTTGTCGCCCGCTATCTGGCGAAGCAGG
ACGGCATCGCGGCCAACATCCGCTTCTCCCTGCCTGCCGGTTTCGCCTGGCGGCTGATGCGCGACCTGCTGCCCGGCATT
CCCGAACTGAGCCCCTTCGACACCGAAGTGATGCGCTGGCGGCTATTGGGTCTGTTTGTTTCAGACGGCCTCAATGCCCC
CGAGCTGGCGTCGGCCAAACAGGTGCTGTCGGGCTATCTTGCGGGCGGCGAAACGGCGGCCTACCGGCTTGCCGGGCAGA
TCGCCGACATTTTCGACCAATACCTTGTCTACCGTCCCGACTGGATAGACGCCTGGCAGCGCGGCAAACCGATCGGGCTG
GGCGGCGACGAAGCCTGGCAGGCCGAATTGTGGCGCTTTCTCGACGACGGCCGCCAAAGCGCGCCGCACCGCGTCGAAAT
GCGCCGCCGCCTGAGCGCCGCCCTTGCCGCGCCGCCCGCAGGCGTGCTGCCCGATCGCCTGTGCGTGTTCGGCATCGCCA
CCCTCGCGCCGATGTACCTGCAACTCTTACAGGAACTCGCACAACACTGCGAAGTGCACATCTTCGCCCTCAACCCCTCG
GCCGAATACTGGGGCAACATCATCGAACCGGCGCAGATGCTGCAACAGAACGATGCCGATCCCGCCGCCGCAGGCCACCC
CCTGCTCGCCTCGTTGGGCAAACAGGGGCGTGACTTTTTCAACGCCCTGGCCGACAGCGAATTGGCCGCCGACCTTTCCG
TCTACCGCGACGAAGCCCTTTCAGACGGCCTCCTGCACCGCCTGCAATACGGCCTGCAAACCCTCGCCCTGCCCGACGGA
AGCGCCCGCACCGACGACAGCATCCGCATCGTTGCCGCCCACAGCCCCCTGCGCGAACTGCAAATCCTCAAAGAACACCT
GCTCGCCCTGCTGGCCGGACATCCCGACCTGCAGCCGCACGACATCGCCGTCCTCACCCCCGACATCGAACCCTACGCCC
CCTTCCTCGAAGCCGTGTTCGGCCGCGAAAGCCCGCAGCCGCTGCCCTATTCCGTGTCCGACGTCAAACTCGGCCGCCGC
CGCCCGCTGCTTTCTGCGCTCGAACAGCTGGCCGACATCTTCGACAGCCGCTTCGAAGCCGACAAAATCTTCGCCCTCTT
GGAAAACGAAACCGTCCTCGCCCGCTTCGGCCTCACCCTCGAAGACCTGCCGCTGCTGCGCGACACCGCCGAACGCCTCA
ACATCCGCTGGGGCGCCGACGAAGCCATGCGCGGCGGCGGCAGCGCCCTGTTCACCTGGCAGCAGGGGCTGGACAGAATC
GCCCTCGGCTGGATGCTGCCCGACAACGGCAGCCTGTGGCAGGGCGTCAGCCCGTGGCACGCCGACCCCGGCCACACCGC
CGTTTACGCCCGCTTCGCCGCCTTCATAGGCCGTCTGAAACACTGGCACGCCATCTGGCAGCGGCCCGCAGACATCGCAG
GATGGGCGGAGCGTATCCGCAGCCTTGCCGAAGACATATGCGAACCGTCCGAAGCAGACCGCGCCGCCGCCCAGCAGCTC
GCGCAGGCACTCGCCCGCTGGCAGCAGGAAGCCGCCCTCGCCGGCTTTATCGGCGAACTCTCCGGCAGCATTGCAAGCCT
GCACCTGTCGAATTTTCTCGGCAGCCGCAGCGACGCCGGCTTCCTGCGCGGCGGCATCACCTTCTGCGGCATGGTGCCCA
TGCGCTCCCTGCCCTTCAAAGTCCTGTGCCTCATCGGCCTCGACGACGGCAAATTCCCGCGCGATACCCGCGCCGCCGCC
TTCGACCTCATCGCCCGCCACCCGCGCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTTCCTCGAAGCCCT
CATCAGCGCCCGCGAACACCTCTATCTCTCCTACGTCGGCCGCGACATCCGCACCAACGAAGCCCTCGCCCCCTCCGCCC
TCGTCGGCGAACTGGCCGACTGCCTCGCCGACATGACCGGGCAAAGCGTGGAAGAGTTAAACGCCGCCCTCGTCGAAAAC
CACCCCCTGCAAGCCTTCTCCACCCGCTACTTCGACGGCGGCAGACTCAGCTCTACCCGCGCCGACTACGCCGCCGCCCT
GTCCGCCCCGCCCGCCAAACCCGCCCCCTTCTGCGGCACTGAATCGGAAAACGCAGACGGCGGCGCCGGCATTTCCACCG
AAGTCGGCCACGCAGCCTTTCTCGACTTCTGGCGCAACCCCGTCAAACACTGGCTCTCGCACACACTCGACTGGCAGGCG
CCCTATCTCGGCGGCGCATGGGAAACCGCCGAACCCTTCGAGCCGCCGTGCCCGCGCGACACCGCCGCCGCCTACCTCGA
CGCCCGCCTCAACCGCCGCGACTTCGCCGACACCGCCCAAGTCCTCGAAGCCCGCTCCCTGCTGCCCGCAGGCGAAATCG
GCACACTCTGGCGCGAACGCTGCGAAACCGCCGCCAAATCCCTCGACTCCGACCTCATCGCCAGCCCGCCCCTACCCGCC
GCCCCCTACACCTTCGTTTCAGACGGCCTCACCCTCTACGGCAGCCTCGACAGCCTGCACCGCGACGGCCGCATCCGCTT
CCTCGACCACGCCCCCAACGCCCCCGAAAAAACCGTCCTCCTGCTCGAACACCTCATCTACAACGCCGTGCGCCCCGACA
GCGCCGCCGACCTGCGCAGCCACTGGGTGCAGCCCGACCAAATCACCACTCTCCCCCCCATCCCGCAGCAACAGGCGCGC
ACCCTGCTTGCCGCTTGGCTCGCCTGGTGGCGCACCGGCCAAAGCCGCCCCCTGCCCTTCTTTGCCAAAACCACCCTCGC
CGCCGCCGAAGCCCTGTTGCCCGACGGCAAAAAAACAGAAGAAGAGCGGCGCCTGTCCGCCTACAAAGCCGCCGCCACCG
CCTACTTCGGCGGCAAAAAAAGCACCGGCCAGTGCGACTACGCCGAAGTCGCCCAAGTCTTCGGCCGCAACGACACCCCG
CCCGTCGACGGCGAAACCTTCTGGCTGCTGGCGGAAAACCTCGCCGCCCCCCTGCTCGCTGCCCTGTCCGACACCAAAGA
GGCCGTCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(774-991)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

55.028

100

0.553

Multiple sequence alignment