Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACF2JY_RS14835 Genome accession   NZ_CP172966
Coordinates   2859241..2859819 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain cel     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2854241..2864819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS14800 (ACF2JY_14800) lepB 2854248..2854754 (-) 507 WP_003233128.1 signal peptidase I -
  ACF2JY_RS14805 (ACF2JY_14805) yhjE 2854756..2855379 (-) 624 WP_046380907.1 TVP38/TMEM64 family protein -
  ACF2JY_RS14810 (ACF2JY_14810) - 2855531..2855902 (+) 372 WP_014476361.1 hypothetical protein -
  ACF2JY_RS14815 (ACF2JY_14815) yhjC 2856101..2856301 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACF2JY_RS14820 (ACF2JY_14820) yhjB 2856298..2857767 (+) 1470 WP_046380906.1 sodium:solute symporter -
  ACF2JY_RS14825 (ACF2JY_14825) yhjA 2857810..2858079 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  ACF2JY_RS14830 (ACF2JY_14830) yhxD 2858295..2859194 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  ACF2JY_RS14835 (ACF2JY_14835) comK 2859241..2859819 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACF2JY_RS14840 (ACF2JY_14840) yhzC 2860112..2860345 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACF2JY_RS14845 (ACF2JY_14845) yhxC 2860373..2861230 (-) 858 WP_400558116.1 SDR family oxidoreductase -
  ACF2JY_RS14850 (ACF2JY_14850) comW 2861342..2862871 (+) 1530 WP_038428744.1 FAD-dependent oxidoreductase -
  ACF2JY_RS14855 (ACF2JY_14855) hemAT 2863127..2863504 (+) 378 Protein_2936 heme-based aerotactic transducer HemAT -
  ACF2JY_RS14860 (ACF2JY_14860) - 2863511..2864308 (+) 798 WP_396125290.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1069729 ACF2JY_RS14835 WP_003245329.1 2859241..2859819(-) (comK) [Bacillus subtilis strain cel]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1069729 ACF2JY_RS14835 WP_003245329.1 2859241..2859819(-) (comK) [Bacillus subtilis strain cel]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment