Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACF2JY_RS12890 Genome accession   NZ_CP172966
Coordinates   2501786..2502250 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain cel     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496786..2507250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS12870 (ACF2JY_12870) fadH 2497974..2498738 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  ACF2JY_RS12875 (ACF2JY_12875) ppeE 2498881..2499741 (+) 861 WP_017697271.1 metallophosphoesterase -
  ACF2JY_RS12880 (ACF2JY_12880) ltdD 2499798..2500292 (+) 495 WP_072557193.1 L,D-transpeptidase family protein -
  ACF2JY_RS12885 (ACF2JY_12885) ykuC 2500368..2501660 (+) 1293 WP_046380992.1 MFS transporter -
  ACF2JY_RS12890 (ACF2JY_12890) kre 2501786..2502250 (+) 465 WP_003232406.1 YkyB family protein Regulator
  ACF2JY_RS12895 (ACF2JY_12895) cheV 2502294..2503205 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  ACF2JY_RS12900 (ACF2JY_12900) - 2503409..2503570 (+) 162 WP_003245246.1 hypothetical protein -
  ACF2JY_RS12905 (ACF2JY_12905) dapX 2503772..2504953 (+) 1182 WP_003232415.1 aminotransferase A -
  ACF2JY_RS12910 (ACF2JY_12910) kinA 2504963..2506783 (-) 1821 WP_046380991.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=1069717 ACF2JY_RS12890 WP_003232406.1 2501786..2502250(+) (kre) [Bacillus subtilis strain cel]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1069717 ACF2JY_RS12890 WP_003232406.1 2501786..2502250(+) (kre) [Bacillus subtilis strain cel]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment