Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACF2JY_RS09450 Genome accession   NZ_CP172966
Coordinates   1770614..1771234 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765614..1776234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS09430 (ACF2JY_09430) dnaD 1765917..1766615 (+) 699 WP_029726781.1 DNA replication protein DnaD -
  ACF2JY_RS09435 (ACF2JY_09435) nth 1766634..1767293 (+) 660 WP_009967580.1 endonuclease III -
  ACF2JY_RS09440 (ACF2JY_09440) ypoC 1767290..1767784 (+) 495 WP_029726783.1 YpoC family protein -
  ACF2JY_RS09445 (ACF2JY_09445) ponA 1767860..1770592 (-) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  ACF2JY_RS09450 (ACF2JY_09450) recU 1770614..1771234 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACF2JY_RS09455 (ACF2JY_09455) yppC 1771275..1772237 (+) 963 WP_046381140.1 DUF2515 domain-containing protein -
  ACF2JY_RS09460 (ACF2JY_09460) sspM 1772262..1772366 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACF2JY_RS09465 (ACF2JY_09465) yppD 1772565..1772810 (+) 246 WP_004398488.1 YppD family protein -
  ACF2JY_RS09470 (ACF2JY_09470) yppE 1772856..1773227 (+) 372 WP_003246080.1 YppE family protein -
  ACF2JY_RS09475 (ACF2JY_09475) yppF 1773266..1773454 (-) 189 WP_003230690.1 YppF family protein -
  ACF2JY_RS09480 (ACF2JY_09480) sppG 1773642..1774019 (+) 378 WP_046381139.1 YppG family protein -
  ACF2JY_RS09485 (ACF2JY_09485) ypqA 1774040..1774459 (-) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  ACF2JY_RS09490 (ACF2JY_09490) ptsA 1774597..1775103 (+) 507 WP_038428153.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1069710 ACF2JY_RS09450 WP_004399067.1 1770614..1771234(-) (recU) [Bacillus subtilis strain cel]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1069710 ACF2JY_RS09450 WP_004399067.1 1770614..1771234(-) (recU) [Bacillus subtilis strain cel]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment